LifeWatch ERIC Metadata Catalogue
The InBIO Barcoding Initiative Database: Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881)
The dataset contains one record of the species Cochylimorpha punctiferana (Ragonot, 1881) (Lepidoptera, Tortricidae) collected in continental Portugal in 2016.The study of this specimen resulted in the resurrection of the Portuguese endemic species C. punctiferana from synonymy with C. discopunctana (Eversmann, 1844) based on clear differences in female genitalia and DNA barcode by Corley et al. (2020). A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
Default
Identification
- Alternate Identifier
- 10.15468/4u34gh
- Alternate Identifier
- 3f23468a-fdd7-4327-8178-5bafc023eb40
- Alternate Identifier
- http://ipt.gbif.pt/ipt/resource?r=ibi_lepidoptera_cochylimorph
- Publication Date
- 2021-01-05
- Title
- The InBIO Barcoding Initiative Database: Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881)
- Abstract
- The dataset contains one record of the species Cochylimorpha punctiferana (Ragonot, 1881) (Lepidoptera, Tortricidae) collected in continental Portugal in 2016.The study of this specimen resulted in the resurrection of the Portuguese endemic species C. punctiferana from synonymy with C. discopunctana (Eversmann, 1844) based on clear differences in female genitalia and DNA barcode by Corley et al. (2020). A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
- purpose
- The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.
- Dataset Language
- ENGLISH
- Dataset Creator
-
Martin Corley (Researcher )
Pucketty Farm Cottage , Faringdon , Oxfordshire , SN7 8JP , UNITED_KINGDOM
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher )
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Post-Doc Researcher )
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher )
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL
- Metadata Provider
-
Martin Corley (Researcher )
Pucketty Farm Cottage , Faringdon , Oxfordshire , SN7 8JP , UNITED_KINGDOM
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher )
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Coordinating Researcher )
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher )
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL
- Dataset Contact
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher )
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL
- Dataset Contact
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher )
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL
- Keywords (n/a )
-
- Lepidoptera
- Keywords (n/a )
-
- Species
- Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type.xml )
-
- Occurrence
- Keywords (n/a )
-
- Cytochrome c oxidase I (COI)
- Keywords (n/a )
-
- DNA barcode
- Keywords (n/a )
-
- Continental Portugal
- Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type_2015-07-10.xml )
-
- Occurrence
Geographic Coverage
- Geographic Description
- Continental Portugal.
Bounding Box
- West Bounding Coordinate
- -7.573
- East Bounding Coordinate
- -6.902
- North Bounding Coordinate
- 41.766
- South Bounding Coordinate
- 40.326
Temporal Coverage
Range of Dates
- Begin Date
-
2016-04-24
- End Date
-
2016-04-24
Taxonomic Coverage
- General Taxonomic Coverage
- This dataset is composed of one specimen identified as Cochylimorpha punctiferana (Ragonot, 1881) (Lepidoptera, Tortricidae), a moth species.
Taxonomic Classification
- Taxonomic Rank Name
- Kingdom
- Taxonomic Rank Value
- Animalia
Taxonomic Classification
- Taxonomic Rank Name
- Phylum
- Taxonomic Rank Value
- Arthropoda
Taxonomic Classification
- Taxonomic Rank Name
- Class
- Taxonomic Rank Value
- Insecta
Taxonomic Classification
- Taxonomic Rank Name
- Order
- Taxonomic Rank Value
- Lepidoptera
Taxonomic Classification
- Taxonomic Rank Name
- Family
- Taxonomic Rank Value
- Tortricidae
License Information
- Intellectual Rights
-
This work is licensed under a
Creative Commons Attribution (CC-BY) 4.0 License
.
Distributiondocument
Projects
Projects
• ProjectInBIO Barcoding Initiative
- Title
- The InBIO Barcoding Initiative Database: Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881)
Personnel
Individual Name
- Given Name
- Pedro
- Surname
- Beja
- User ID
- 0000-0001-8164-0760
- Role
- AUTHOR
Personnel
Individual Name
- Given Name
- Martin
- Surname
- Corley
- User ID
- 0000-0003-4240-8007
- Role
- AUTHOR
Personnel
Individual Name
- Given Name
- Sónia
- Surname
- Ferreira
- User ID
- 0000-0002-6884-3966
- Role
- AUTHOR
Personnel
Individual Name
- Given Name
- Pedro
- Surname
- Sousa
- User ID
- 0000-0002-5859-9656
- Role
- ORIGINATOR
- Abstract
- The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.
- Funding
- InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER).
Study Area Description
- Descriptor
-
A single specimen was collected in Vale da Porca, Macedo de Cavaleiros, part of the Bragança district of Continental Portugal, in 2016.
Design Description
- Description
- The specimen in this dataset was collected in a single locality in Continental Portugal.
Methods
Methods
• Method
Method Step
- Description
- The Cochylimorpha punctiferana specimen was captured in a single locality of continental Portugal, in 2016.
Method Step
- Description
- The captured specimen was preserved in 96% ethanol.
Method Step
- Description
- The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (CORLEY & FERREIRA, 2020; KENNEL, 1908-1921, 1913; RAGONOT, 1881; RAZOWSKI, 1970; RAZOWSKI, 2002, 2009).
Method Step
- Description
- A DNA barcode was sequenced from a tissue sample, one leg, that was removed. DNA was then extracted, and a 658 bp COI DNA barcode fragment was amplified and sequenced.
Method Step
- Description
- The obtained sequence was submitted to BOLD and GenBank databases and the specimen morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
Method Step
- Description
- Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).
Sampling
- Study Extent
-
A single specimen was collected in Vale da Porca, in Continental Portugal, in 2016.
- Sampling Description
- The Cochylimorpha punctiferana specimen was captured in continental Portugal in 2016. The captured specimen was preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimen was morphologically identified.
qualityControl
- Description
- The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).
