The InBIO Barcoding Initiative Database: A taxonomic revision of the Western Palaearctic genus Cacochroa Heinemann, 1870 (Lepidoptera, Depressariidae)

The dataset contains 11 records of moth specimens (Lepidoptera, Depressariidae) collected from 1988 to 2016 in seven South European and North African countries. The study of these specimens resulted in the description of a new genus, Rosetea Corley & Ferreira, 2019. The new genus contains two species previously placed in the genus Cacochroa Heinemann, 1870, Rosetea corfuella (Lvovsky, 2000) and R. rosetella (Corley, 2018), but also a new species, R. sara Corley & Ferreira, 2019, described based on differences found in the male and female genitalia and on DNA barcodes in Corley et al. (2019). Captured specimens were identified to species level and preserved in 96% ethanol, with one exception kept in dry storage. A tissue sample, one leg, was collected from each individual, from which DNA was extracted. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences were deposited in BOLD (Barcode of Life Data System) online database. DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).

Identification

Alternate Identifier: 10.15468/g5hudd

Alternate Identifier: 900a387b-cf8b-479b-b983-69fa973f3bcd

Alternate Identifier: http://ipt.gbif.pt/ipt/resource?r=ibi_lepidoptera_cacochroa

Publication Date: 2021-01-05

Title: The InBIO Barcoding Initiative Database: A taxonomic revision of the Western Palaearctic genus Cacochroa Heinemann, 1870 (Lepidoptera, Depressariidae)

Abstract: The dataset contains 11 records of moth specimens (Lepidoptera, Depressariidae) collected from 1988 to 2016 in seven South European and North African countries. The study of these specimens resulted in the description of a new genus, Rosetea Corley & Ferreira, 2019. The new genus contains two species previously placed in the genus Cacochroa Heinemann, 1870, Rosetea corfuella (Lvovsky, 2000) and R. rosetella (Corley, 2018), but also a new species, R. sara Corley & Ferreira, 2019, described based on differences found in the male and female genitalia and on DNA barcodes in Corley et al. (2019). Captured specimens were identified to species level and preserved in 96% ethanol, with one exception kept in dry storage. A tissue sample, one leg, was collected from each individual, from which DNA was extracted. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences were deposited in BOLD (Barcode of Life Data System) online database. DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).

purpose: The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.

Dataset Language: ENGLISH

Dataset Creator: Martin Corley (Researcher )

Pucketty Farm Cottage , Faringdon , Oxfordshire , SN7 8JP , UNITED_KINGDOM

Dataset Creator: CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher )

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL

Dataset Creator: CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Post-Doc Researcher )

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL

Dataset Creator: CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher )

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL

Metadata Provider: Martin Corley (Researcher )

Pucketty Farm Cottage , Faringdon , Oxfordshire , SN7 8JP , UNITED_KINGDOM

Metadata Provider: CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher )

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL

Metadata Provider: CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Coordinating Researcher )

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL

Metadata Provider: CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher )

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL

Dataset Contact: CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher )

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL

Dataset Contact: CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher )

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7 , Vairão , Porto , 4485-661 , PORTUGAL

Keywords (n/a )

Lepidoptera

Keywords (n/a )

Species

Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type.xml )

Occurrence

Keywords (n/a )

Cytochrome c oxidase I (COI)

Keywords (n/a )

DNA barcode

Keywords (n/a )

Europe

Keywords (n/a )

Africa

Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type_2015-07-10.xml )

Occurrence

Geographic Coverage

Geographic Description: Southern Europe and North Africa

Bounding Box

West Bounding Coordinate: -8.999

East Bounding Coordinate: 26.678

North Bounding Coordinate: 43.52

South Bounding Coordinate: 31.214

Temporal Coverage

Range of Dates

Begin Date

1988-05-05

End Date

2016-08-14

Taxonomic Coverage

General Taxonomic Coverage

This dataset is composed of data relating to 11 Lepidoptera specimens. All specimens were determined to species level.

Five species belonging to two genera, Cacochroa Heinemann, 1870 and Rosetea Corley & Ferreira 2019, are represented in the dataset. Both genera belong to the family Depressariidae.

Taxonomic Classification

Taxonomic Rank Name: Kingdom

Taxonomic Rank Value: Animalia

Taxonomic Classification

Taxonomic Rank Name: Phylum

Taxonomic Rank Value: Arthropoda

Taxonomic Classification

Taxonomic Rank Name: Class

Taxonomic Rank Value: Insecta

Taxonomic Classification

Taxonomic Rank Name: Order

Taxonomic Rank Value: Lepidoptera

Taxonomic Classification

Taxonomic Rank Name: Family

Taxonomic Rank Value: Depressariidae

License Information

Intellectual Rights

This work is licensed under a

Creative Commons Attribution (CC-BY) 4.0 License

Distributiondocument

Online

URL: http://www.boldsystems.org/index.php/Public_SearchTerms?query=DS-IBILP1

Projects

• ProjectInBIO Barcoding Initiative

Title: The InBIO Barcoding Initiative Database: A taxonomic revision of the Western Palaearctic genus Cacochroa Heinemann, 1870 (Lepidoptera, Depressariidae)

Personnel

Individual Name

Given Name: Pedro

Surname: Beja

User ID: 0000-0001-8164-0760

Role: AUTHOR

Personnel

Individual Name

Given Name: Martin

Surname: Corley

User ID: 0000-0003-4240-8007

Role: AUTHOR

Personnel

Individual Name

Given Name: Sónia

Surname: Ferreira

User ID: 0000-0002-6884-3966

Role: AUTHOR

Personnel

Individual Name

Given Name: Pedro

Surname: Sousa

User ID: 0000-0002-5859-9656

Role: ORIGINATOR

Abstract: The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.

Funding: InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER).

Study Area Description

Descriptor

Specimens were collected in five European countries, Bulgaria, France, Greece, Italy and Portugal and in two African countries, Morocco and Tunisia, in a total of ten different localities. Sampling was conducted from 1988 to 2016.

Design Description

Description: Specimens in this dataset were collected in field work carried out between 1988 and 2016. Specimens were captured by ten different collectors.

Methods

• Method

Method Step

Description: Sampling of specimens was done at ten different localities of seven different European and African countries., collected between 1988 and 2016.

Method Step

Description: The captured specimen was preserved in 96% ethanol with a single exception kept in dry storage.

Method Step

Description: The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Corley, 2018; Corley. & Ferreira 2019; Heinemann, 1870; Herrich-Schäffer, [1853−1855] 1847−1855; Lvovsky, 1981 and 2000; Rebel, 1901).

Method Step

Description: DNA barcodes were sequenced from all specimens. For this, one leg was removed from each individual from which a 658 bp COI DNA barcode fragment was extracted, amplified and sequenced.

Method Step

Description: The obtained sequences were submitted to BOLD database and the specimens’ morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.

Method Step

Description: Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).

Sampling

Study Extent

Specimens were collected in ten different localities of seven different countries, most of them bordering the Mediterranean Sea. Sampling was conducted from 1988 to 2016.

Sampling Description: Sampling of specimens was done at ten different localities of seven different countries, Bulgaria, France, Greece, Italy and Portugal in Europe and Morocco and Tunisia in in two Africa. Sampling was conducted between 1988 to 2016. Captured specimens were preserved in 96% ethanol, with one exception kept in dry storage. Preserved specimens are deposited in two Museums: Natural History Museum, London and the Natural History Museum of Denmark, Zoological Collection, University of Copenhagen and in three research collections: Martin Corley’s, Zdenko Tokár’s and Giorgio Baldizzone’s.

qualityControl

Description: The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 (http://openrefine.org/).

Not available

Default

Identification

Geographic Coverage

Bounding Box

Temporal Coverage

Range of Dates

Taxonomic Coverage

Taxonomic Classification

Taxonomic Classification

Taxonomic Classification

Taxonomic Classification

Taxonomic Classification

License Information

Distributiondocument

Online

Projects

Projects

• ProjectInBIO Barcoding Initiative

Personnel

Individual Name

Personnel

Individual Name

Personnel

Individual Name

Personnel

Individual Name

Study Area Description

Design Description

Methods

Methods

• Method

Method Step

Method Step

Method Step

Method Step

Method Step

Method Step

Sampling

qualityControl