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worrms is a R client for the World Register of Marine Species REST webservices (http://www.marinespecies.org/rest). The aim of a World Register of Marine Species (WoRMS) is to provide an authoritative and comprehensive list of names of marine organisms, including information on synonymy. While the highest priority goes to valid names, other names in use are included so that this register can serve as a guide to interpret taxonomic literature. The content of WoRMS is controlled by taxonomic and thematic experts, not by database managers. WoRMS has an editorial management system where each taxonomic group is represented by an expert who has the authority over the content, and is responsible for controlling the quality of the information. Each of these main taxonomic editors can invite several specialists of smaller groups within their area of responsibility to join them.
pywhip is a Python package to validate data against whip specifications, a human and machine-readable syntax to express specifications for data.
mregions provides access to the data from http://www.marineregions.org in R. It uses both the Marine Regions Gazetteer Web Services and the Marine Regions OGC Web Services. mregions can help in a variety of use cases: - visualize marine regions alone; - visualize marine regions with associated data paired with analysis; - use marine region geospatial boundaries to query data providers (e.g., OBIS: http://www.iobis.org); - Geocode: get geolocation data from place names; - reverse Geocode: get place names from geolocation data.
The goal of MarineSPEED is to provide a benchmark data set for presence-only species distribution modeling (SDM) in order to facilitate reproducible and comparable SDM research. It contains species occurrences (coordinates) from a wide diversity of marine species and associated environmental data from Bio-ORACLE and MARSPEC. Some additional information about MarineSPEED can be found in the R Shiny viewer at https://rshiny.lifewatch.be/marinespeed/.
BVMtool is a set of R scripts automating marine biological valuation calculations based on the biological valuation concept as developed by Derous et al. 2007 and described by Deneudt et al 2013. Based on a recommended format for data input, the script facilitates the calculation of a number of valuation questions that are commonly solved when observational data on species densities are available. The results of the valuation questions are summarized in final scores for each ecosystem component and can be combined with the final results obtained for other ecosystem components. Subzones can be defined as raster grid cells of a desired size or can be based on polygons of a habitat classification provided by the user. The script also offers the possibility to run a number of quality control procedures on the input data, including a taxonomic quality control using the web services built on the World Register of Marine Species.