This service aims at creating an OTU table with species information that can be processed by WoRMS and WRIMS (steps 7 and 8). It represents the Step 6 of the ARMS Workflow within the Internal Joint Initiative.

A service that aims at verifying the coordinates (latitude and longitude in column 3 and 4 of file “Pop_trop_SIA.csv”) match with the location (“country” and “location” in column 1 and 2 of file “Pop_troph_SIA.csv”) using the “SIAShapefile.shp”. This is very important because these geographic coordinates will be used in other services to extract and retrieve environmental data on the location of the species observation/occurrence. So scientists need to ensure these coordinates are correct. It represents the Step 3.2 of the Crustaceans Workflow within the Internal Joint Initiative.

This service aims at creating a stack of coregistered multi-spectral raster images. It groups two seasons images (summer and autumn) and stack them to obtain a unique image at native resolution (2 meters) by using the Worldview-2 sensor. It represents the Step 5 of the Ailanthus Workflow within the Internal Joint Initiative.

This service aims to compute a list of taxa IDs detected from metabarcoding sequences of environmental DNA (eDNA) samples. This service contains eight substeps (1.1 to 1.8) implemented as a unique step. The eight substeps perform (1) sequencing error correction (using BayesHammer-SPAdes); (2) pairwise alignment, (3) pre-filtering, (4) dereplication, (5) attribute filtering, (6) clustering and OTU tab-producer (using OBITools); (7) taxonomic assignment (using blastn); (8) OTUs table generator. Several types of eDNA samples can be processed (i.e. water, feces, soil). It represents the Step 1 of the Metabarcoding Workflow within the Internal Joint Initiative.

This step of the ARMS IJI workflow does the following: - Input: the output from the previous step (running a taxon check on the input species names using the WoRMS taxon checker); - Input: geographical locations for the sample(s) that those species were found at; - Check: using the WRIMS taxon match webservice to check the known distribution of the species; - Output: information about whether the species are alien or native to the location they were found at. It represents the Step 8 of the ARMS Workflow within the Internal Joint Initiative.

This service allows to filter the list of samples in the MasterARMS csv file on date range (start and end date in ISO format) and geographic location (lat and lon in decimal degrees). Moreover, also the selection of specific samples is permitted. It represents the Step 3 of the ARMS Workflow within the Internal Joint Initiative.

This service aims at building two datacubes based on the occurrences. The datacube aggregates (=counts) occurrences on a regular grid. This count has a stochastic component that takes the uncertainty field into account. All this process has been developed in R in the frame of the TrIAS project. It represents the Step 4 of the Biotope vulnerability Workflow within the Internal Joint Initiative.

This service aims to reformat and produce final output in variuos formats for human and machine2machine reading. It represents the Step 9 of the ARMS Workflow within the Internal Joint Initiative.

This step of the ARMS IJI workflow does the following: - Input: the OTU tables from the previous step (running the omics pipeline), containing taxa (usually genus or species names) obtained from the databases used by the pipeline; - Check: using the WoRMS taxon match webservice to check for the WoRMS match to those taxa; - Output: the WoRMS match (yes or not) and, if matched, the scientific name and aphiaID. It represents the Step 7 of the ARMS Workflow within the Internal Joint Initiative.

A service that aims at verifying the species names (performing the taxonomy check) by using the input file SIA.csv. It represents the Step 1 of the Crustaceans Workflow within the Internal Joint Initiative.