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    The dataset contains records of Phytobenthos collected in the lower valley of River Sabor (NE Portugal) in the scope of the long-term Ecological Monitoring Program (PME) of the Baixo Sabor Hydroelectric Dams (AHBS), promoted by EDP – Energias de Portugal, S.A. Data were collected in May 2012, during field visits to 23 sampling stations located along the lower Sabor valley up to 70 km upstream of the mouth, and in the Vilariça stream. A total of 9552 individuals belonging to 78 species and other taxonomic categories were found and identified.