OTU
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This service aims at creating an OTU table with species information that can be processed by WoRMS and WRIMS (steps 7 and 8). It represents the Step 6 of the ARMS Workflow within the Internal Joint Initiative.
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The output file of the "ARMS OTU Unifier" service (step 6) and the input file of the "WoRMS Taxonomic Checker" (step 7) of the ARMS Workflow within the Internal Joint Initiative. It is a CSV file with species information, a sort of OTU table, that is prepared to be processed by WoRMS and WRIMS (steps 7 and 8).
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It is a fasta file produced when PEMA is run on gene 18S, gene ITS and COI sequences.
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The output file of the "WRIMS Invasive Checker" (step 8) and the input file of the "PEMA Converter" service (step 9) of the ARMS Workflow within the Internal Joint Initiative. It is a CSV file with species information, a sort of OTU table, that checks on the known distribution of each species detected in the samples processed through this pipeline, whether they are alien to the location.
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It is the output file of the optional step 5.3 "Bold Retriever" and the input file of "ARMS OTU Unifier" (step 6) of the ARMS workflow of the Internal Joint Initiative.
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The output file of the "WoRMS Taxonomic Checker" service (step 7) and the input file of the "WRIMS Invasive Checker" (step 8) of the ARMS Workflow within the Internal Joint Initiative. It is a CSV file with species information, a sort of OTU table, that returns the approved "scientific name" and "aphiaID".