mregions provides access to the data from http://www.marineregions.org in R. It uses both the Marine Regions Gazetteer Web Services and the Marine Regions OGC Web Services. mregions can help in a variety of use cases: - visualize marine regions alone; - visualize marine regions with associated data paired with analysis; - use marine region geospatial boundaries to query data providers (e.g., OBIS: http://www.iobis.org); - Geocode: get geolocation data from place names; - reverse Geocode: get place names from geolocation data.

This package provides functionality to access data from the European Tracking Network (ETN) database hosted by the Flanders Marine Institute (VLIZ) as part of the Flemish contribution to LifeWatch. ETN data is subject to the ETN data policy and can be: - restricted: under moratorium and only accessible to logged-in data owners/collaborators - unrestricted: publicly accessible without login and routinely published to international biodiversity facilities The ETN infrastructure currently requires the package to be run within the LifeWatch.be RStudio server, which is password protected. A login can be requested at http://www.lifewatch.be/etn/contact.

A tool for Quality Controlling Darwin Core based datasets according to the EMODnet Biology guidelines. The tool performs a thorough QC on OBIS-env datasets and occurrence core datasets. It can use an IPT resource URL as input. Quality controlling a dataset is fundamental in order to ensure its appropriate usage. The EMODnetBiocheck R package is developed in the framework of the LifeWatch and EMODnet Biology projects, and managed by the EurOBIS (European Ocean Biodiversity Information System) Data Management Team at the Flanders Marine Institute (VLIZ). It helps users to Quality Control their (marine) biological datasets by performing a varied number of quality checks on both published and unpublished datasets. This R package also allows a thorough visual exploration of the dataset, while highlighting potential issues within the dataset. The R package can be used on: i) public IPT resources; ii) loaded data tables. The only requirement to use the R package is the existence of an Occurrence table in the dataset, although the analysis reaches its full potential using an IPT resource with OBIS-ENV data format (Core: "Event"; Extensions: "Occurrence" and "Extended Measurements or Facts").

Read and write Frictionless Data Packages. A 'Data Package' (https://specs.frictionlessdata.io/data-package/) is a simple container format and standard to describe and package a collection of (tabular) data. It is typically used to publish FAIR (https://www.go-fair.org/fair-principles/) and open datasets.

bioRad provides standardized methods for extracting and reporting biological signals from weather radars. It includes functionality to inspect low-level radar data, process these data into meaningful biological information on animal speeds and directions at different altitudes in the atmosphere, visualize these biological extractions, and calculate further summary statistics.

rgbif is an R package to search and retrieve data from the Global Biodiverity Information Facilty (GBIF). rgbif wraps R code around the GBIF API to allow you to talk to GBIF from R.

The goal of MarineSPEED is to provide a benchmark data set for presence-only species distribution modeling (SDM) in order to facilitate reproducible and comparable SDM research. It contains species occurrences (coordinates) from a wide diversity of marine species and associated environmental data from Bio-ORACLE and MARSPEC. Some additional information about MarineSPEED can be found in the R Shiny viewer at https://rshiny.lifewatch.be/marinespeed/.

Prepare animal tracking data from Movebank (https://www.movebank.org/cms/movebank-main) for publication in a research repository or the Global Biodiversity Information Facility (GBIF) (https://www.gbif.org/).

pydov is a Python package to query and download data from Databank Ondergrond Vlaanderen (DOV). It is hosted on GitHub and development is coordinated by Databank Ondergrond Vlaanderen (DOV). DOV aggregates data about soil, subsoil and groundwater of Flanders and makes them publicly available. Interactive and human-readable extraction and querying of the data is provided by a web application, whereas the focus of this package is to support machine-based extraction and conversion of the data.

taxize allows users to search over many taxonomic data sources for species names (scientific and common) and download up and downstream taxonomic hierarchical information - among other things. This package wraps APIs for a large suite of taxonomic databases availabe on the web. The taxize book: https://taxize.dev Package documentation: https://docs.ropensci.org/taxize/