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  • It is a fasta file produced when PEMA is run on gene 18S, gene ITS and COI sequences.

  • It is the output file of the optional step 5.3 "Bold Retriever" and the input file of "ARMS OTU Unifier" (step 6) of the ARMS workflow of the Internal Joint Initiative.

  • taxize allows users to search over many taxonomic data sources for species names (scientific and common) and download up and downstream taxonomic hierarchical information - among other things. This package wraps APIs for a large suite of taxonomic databases availabe on the web. The taxize book: Package documentation: