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  • Output file of the "Occurrences Syntax Normalizer" service (step 3) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It represents also the input file of the "Occurrence Datacube Builder" service (step 4) if incidence is considered, or the input file of the "CIMPAL Calculator" service (step 6) if impact is considered. It is a TXT file with TSV data that includes the alien taxa in the area of interest, from GRIIS or uploaded by the user.

  • Output file of the "CIMPAL Calculator" service (step 6) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It represents also the input of the "Zonal Statistics Producer" service (step 7). It represents the vulnerability of biotopes to the impacts of a given alien species according to the magnitude of impact reported.

  • Input file of the "CIMPAL Calculator" service (step 6) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It links a species impact to a given biotope using predefined weights (defined by the user own criteria / framework). A species can impact multiple biotope categories with different impact weights. If available, the strength of evidence of each specific species-biotope impact weight can be provided, which will allow to calculate an "uncertainty averse" version of the CIMPAL index, otherwise only a "precautionary" version is calculated. The biotope categories must match spatial layers habitat names in input file "Biotopes.zip". The structure of the file is as follows: - Species name (text) - Biotope category (text) - Magnitude of impact (numeric) - Strength of evidence (numeric) (optional)

  • Input file of the "CIMPAL Calculator" service (step 6) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It represents the habitat spatial layers, habitat names must match the biotope categories used in input file "Biotope_NIS_impact_matrix.csv". This information can be provided as a set of files with a single biotope per file (in which case the file must be named single_[name_of_biotope].shp )], as a file with multiple biotopes (in which case the name of each biotope is stored in a field called "Habitat"), or both.

  • Input file of the "CIMPAL Calculator" service (step 6) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It is an optional file that lists the possible pathways or vectors of introduction (the categories are defined by the user) for each non-indigenous species. More than one pathway is allowed per species. The structure of the file is as follows: - Species name (text) - Pathway of introduction (text)

  • Output file of the "Occurrences DataCube Analyst" service (step 5) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It represents also the input of the "Zonal Statistics Producer" service (step 7). It is the vulnerability map that represents the cumulative alien taxa observation for all the years.

  • Output file of the "Occurrences DataCube Builder" service (step 4) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It represents also the input of the "Occurrences DataCube Analyst" service (step 5). It is the invasive species datacube that is a CSV file including spatially aggregated invasive taxa and structured as follows: - Date - Geolocation code - Species name - Frequency - Minimum uncertainty.

  • Categories  

    Output file of the "Biotope GBIF Extractor" service (step 1a) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It represents also the output file of the "Occurrences Dataset Uploader" service (step 1b) when the input comes from the user. It is a CSV file with species occurrences in one country. It contains at least 5 columns: - decimalLatitude (numeric) : the latitude of the observed specimen expressed in decimal degree in WGS 84 coordinate system (EPSG:4326) - decimalLongitude (numeric) : the longitude of the observed specimen expressed in decimal degree in WGS 84 coordinate system (EPSG:4326) - acceptedScientificName (text) : the name of the species - ClassKey (numeric): the GBIF taxonomic class key - TaxonKey (numeric): the GBIF taxonomic class key - year (numeric) : the year of the observation - coordinateUncertaintyInMeters (numeric) : the CE 95 uncertainty on the location of the observation, expressed in meter.

  • Output file of the "Occurrences DataCube Analyst" service (step 5) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It is the single band raster for the simplified version that aggregates all dates together.

  • Output file of the "Zonal Statistics Producer" service (step 7) of the Biotope vulnerability Workflow within the Internal Joint Initiative. It includes the statistics per zone of any given quantitative variable. The separator is a semi-colon and the first line contains the names of the fields. Each row provides the code of the zone and the spatial statistics of the quantitative variable.