Metabarcoding GBIF Extractor
This service extracts from GBIF (Global Biodiversity Information Facility) taxa occurrence records that were not classified as NIS in Step 3 (GBIF NIS Verifier) of the Metabarcoding workflow. This step aims to verify if eDNA detections were identified outside the known distribution range using GBIF occurrences records. Additionally, for such eDNA detections, this step produces a geographical spatial polygon based on occurrence records available in GBIF.
It is part of the Metabarcoding workflow of the Internal Joint Initiative available here: <a href=" https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/67885733-f393-4a55-bdaa-999d0f3f83a0" target="_blank"> https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/67885733-f393-4a55-bdaa-999d0f3f83a0</a>.
Default
- Date ( Publication)
- 2021-03-23
- Date ( Creation)
- 2019-07-04
- Status
- Completed
- Keywords
-
metagenomics
- Keywords
-
biogeography
- Keywords
-
remote sensing
- Keywords
-
Geographic information
- Keywords
-
Spatial data
- Keywords
-
eDNA occurrence
- Keywords
-
Native taxa
- Keywords
-
Unrecorded taxa
- Keywords
-
Metabarcoding
- Keywords
-
IJI
- Access constraints
- License
- Use limitation
- Other constraints
-
Open Access
Distribution Information
- OnLine resource
-
Link to the service
(
WWW:LINK-1.0-http--link
)
- OnLine resource
-
Link to the workflow
(
WWW:LINK-1.0-http--link
)
- Operation name
-
sample_data_step_3_out.rdata
- Function
-
Input file
- Operation name
-
sample_data_step_4_out.rdata
- Function
-
Output file
- Related Services
-
Workflow Studio
- Service Category
-
data processing
- Service Language
- eng
- Service TRL
- TRL 3 – Experimental proof of concept
Metadata
- File identifier
- 22e1a541-6a57-4fd7-ab77-8b0730c88085 XML
- Metadata language
- en
- Hierarchy level
- Service
- Metadata Schema Version
-
1.0
