Metabarcoding GBIF Extractor

This service extracts from GBIF (Global Biodiversity Information Facility) taxa occurrence records that were not classified as NIS in Step 3 (GBIF NIS Verifier) of the Metabarcoding workflow. This step aims to verify if eDNA detections were identified outside the known distribution range using GBIF occurrences records. Additionally, for such eDNA detections, this step produces a geographical spatial polygon based on occurrence records available in GBIF.

It represents the Step 4 of the Metabarcoding Workflow within the Internal Joint Initiative.

Default

Date ( Publication)
2021-03-23
Date ( Creation)
2019-07-04
Status
Under development / Pre operational
Principal investigator
  CIBIO-InBIO - Ana Filipa Filipe

Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS

Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira

Principal investigator
  LifeWatch ERIC ICT Core - ICT Core Group

Keywords

metagenomics
Keywords

biogeography
Keywords

remote sensing
Keywords

Geographic information
Keywords

Spatial data
Keywords

eDNA occurrence
Keywords

Native taxa
Keywords

Unrecorded taxa
Keywords

Metabarcoding
Keywords

IJI
Access constraints
License
Use limitation

The final license will be available soon.
Protocol

DOI
Operation name

sample_data_step_3_out.rdata
Function

Input file
Operation name

sample_data_step_4_out.rdata
Function

Output file
Service Category

data processing
Service Language
eng
Service TRL
TRL 3 – Experimental proof of concept

Metadata

File identifier
22e1a541-6a57-4fd7-ab77-8b0730c88085 XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

1.0
 
 

Overviews

overview
metagenomics.jpg

Spatial extent

Keywords



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