Metabarcoding GBIF Extractor

This service extracts from GBIF (Global Biodiversity Information Facility) taxa occurrence records that were not classified as NIS in Step 3 (GBIF NIS Verifier) of the Metabarcoding workflow. This step aims to verify if eDNA detections were identified outside the known distribution range using GBIF occurrences records. Additionally, for such eDNA detections, this step produces a geographical spatial polygon based on occurrence records available in GBIF.

It represents the Step 4 of the Metabarcoding Workflow within the Internal Joint Initiative.

Default

Identification

Date ( Publication )
2021-03-23
Date ( Creation )
2019-07-04
Status
Under development / Pre operational
Version
1.0
Keywords
Geographic information
Keywords
Spatial data
Keywords
eDNA occurrence
Keywords
Native taxa
Keywords
Unrecorded taxa
Keywords
Metabarcoding
Keywords
IJI
Access constraints
License
Use limitation
The final license will be available soon.
Principal investigator
  CIBIO-InBIO - Ana Filipa Filipe
Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS
Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira
Principal investigator
  LifeWatch ERIC ICT Core - Juan Miguel GONZÁLEZ-ARANDA
 
Protocol
DOI
Operation name
sample_data_step_3_out.rdata
Function
Input file
Operation name
sample_data_step_4_out.rdata
Function
Output file
Service Category
data processing
Service Language
eng
Service TRL
TRL 3 – Experimental proof of concept
 

Overviews

Spatial extent

Keywords


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