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Bold Retriever

This service represents the Step 5.3 of the ARMS Workflow within the Internal Joint Initiative.

It can be run optionally on the fasta files produced by Step 5.2 (PEMA Runner) and produces an all_sequences_grouped_fasta_output.csv file as output.

Default

Date ( Publication)
2021-12-06
Status
Under development / Pre operational
Principal investigator
  VLIZ - Katrina Exter

Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS

Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira

Principal investigator
  LifeWatch ERIC ICT Core - ICT Core Group

Keywords

data management

Keywords

metagenomics

Keywords

data reformat

Keywords

BOLD

Keywords

ARMS

Keywords

IJI

Keywords

fasta

Keywords

sequences

Access constraints
License
Use limitation

The final license will be available soon.

Protocol

DOI

Operation name

all_sequences_grouped.fasta

Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/2dacac79-96c7-41d2-932b-adbfe12976d5

Description

It is a fasta file produced when PEMA is run on gene 18S, gene ITS and COI sequences.

Function

Input file

Operation name

all_sequences_grouped.fasta_output.csv

Function

Output file

Service Category

data processing

Service Language
eng
Service TRL
TRL 7 – System prototype demonstration in operational environment

Metadata

File identifier
243c89df-7bd1-44fe-a680-7e5e3239fe9c XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

1.0

 
 

Overviews

overview
metagenomics.jpg

Spatial extent

Keywords



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