Bold Retriever

This service represents the Step 5.3 of the ARMS Workflow within the Internal Joint Initiative.

It can be run optionally on the fasta files produced by Step 5.2 (PEMA Runner) and produces an all_sequences_grouped_fasta_output.csv file as output.

Default

Date ( Publication)
2021-12-06
Status
Under development / Pre operational
Principal investigator
  VLIZ - Katrina Exter

Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS

Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira

Principal investigator
  LifeWatch ERIC ICT Core - ICT Core Group

Keywords

data management
Keywords

metagenomics
Keywords

data reformat
Keywords

BOLD
Keywords

ARMS
Keywords

IJI
Keywords

fasta
Keywords

sequences
Access constraints
License
Use limitation

The final license will be available soon.
Protocol

DOI
Operation name

all_sequences_grouped.fasta
Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/2dacac79-96c7-41d2-932b-adbfe12976d5

Description

It is a fasta file produced when PEMA is run on gene 18S, gene ITS and COI sequences.
Function

Input file
Operation name

all_sequences_grouped.fasta_output.csv
Function

Output file
Service Category

data processing
Service Language
eng
Service TRL
TRL 7 – System prototype demonstration in operational environment

Metadata

File identifier
243c89df-7bd1-44fe-a680-7e5e3239fe9c XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

1.0
 
 

Overviews

overview
metagenomics.jpg

Spatial extent

Keywords



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