BioVeL Data Refinement Workflow (DRW)

The aim of the (Taxonomic) Data Refinement Workflow is to provide a streamlined workflow environment for preparing observational and specimen data sets for use in scientific analysis on the Taverna platform. The workflow has been designed in a way that, accepts input data in a recognized format, but originating from various sources (e.g. services, local user data sets), includes a number of graphical user interfaces to view and interact with the data, the output of each part of the workflow is compatible with the input of each part, implying that the user is free to choose a specific sequence of actions, allows for the use of custom-built as well as third-party tools applications and tools.<div>

Developed by:

Biodiversity Virtual e-Laboratory (BioVeL) (EU FP7 project)</div><div>

Technology or platform: </div><div>The workflow has been developed to be run in the Taverna automated workflow environment.</div>

Default

Date ( Publication)
2015-04-09
Status
Historical archive / closed
Point of contact
  VLIZ - Helpdesk

Keywords

workflow
Access constraints
Copyright
Service Name

Taxonomic Name Resolution/Occurrence retrieval
Service Description

Taxonomic checklists web services for standardizing species lists and resolving synonyms: CoL, PESI, WoRMS, EDIT, and GBIF. Occurrence data is retrieved through GBIF.

Service Name

Geo-temporal data selection
Service Description

Spatial and temporal selection services are provided by the web-based BioSTIF client.
Service Name

Data quality checks/Filtering
Service Description

Open Refine is used for accessing local an external filtering and cleaning functionalities.

Metadata

File identifier
30557636-8632-4660-88d3-43c5bbaf44a4 XML
Metadata language
en
Hierarchy level
Workflow
Metadata Schema Version

1.0
 
 

Overviews

overview

Spatial extent

Keywords



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