Metadata Catalogue
The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal
The dataset contains one record of the species Borkhausenia crimnodes (Lepidoptera, Oecophoridae) collected in continental Portugal in 2014. This species, a southern hemisphere moth, had not been recorded in Europe before. The specimen was detected and captured by direct search of the environment and preserved in 96% ethanol. A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
Default
Identification
- Alternate Identifier
-
35fbe1f8-7afd-4892-ae73-086719c93a43
- Publication Date
- 2020-09-10
- Title
-
The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal
- Abstract
-
The dataset contains one record of the species Borkhausenia crimnodes (Lepidoptera, Oecophoridae) collected in continental Portugal in 2014. This species, a southern hemisphere moth, had not been recorded in Europe before. The specimen was detected and captured by direct search of the environment and preserved in 96% ethanol. A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
- purpose
-
The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.
- Dataset Language
-
ENGLISH
- Dataset Creator
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Creator
-
Zoological Institute, Russian Academy of Sciences - Alexander L. Lvovsky (Senior Researcher)
1 Universitetskaya Emb.
,Saint Petersburg
,Saint Petersburg
,RUSSIAN_FEDERATION
- Dataset Creator
-
Jorge Rosete (Researcher)
Urbanização Lourisol, Rua Manuel Cerqueira Nobrega
,Louriçal, Pombal
,Leiria
,3105-165
,PORTUGAL
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Post-Doc Researcher)
Campus Agrário de Vairão, R. Padre Armando Quintas, 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)
Campus Agrário de Vairão, R. Padre Armando Quintas, 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Metadata Provider
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Metadata Provider
-
Zoological Institute, Russian Academy of Sciences - Alexander L. Lvovsky (Senior Researcher)
1 Universitetskaya Emb.
,Saint Petersburg
,Saint Petersburg
,RUSSIAN_FEDERATION
- Metadata Provider
-
Jorge Rosete (Researcher)
Urbanização Lourisol, Rua Manuel Cerqueira Nobrega
,Louriçal, Pombal
,Leiria
,3105-165
,PORTUGAL
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Post-Doc Researcher)
Campus Agrário de Vairão, R. Padre Armando Quintas, 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)
Campus Agrário de Vairão, R. Padre Armando Quintas, 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Contact
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)
Campus Agrário de Vairão, R. Padre Armando Quintas, 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Contact
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Keywords (n/a)
-
-
Lepidoptera
-
- Keywords (n/a)
-
-
Occurrence records
-
- Keywords (n/a)
-
-
Species
-
- Keywords (n/a)
-
-
Continental Portugal
-
- Keywords (n/a)
-
-
DNA barcode
-
- Keywords (n/a)
-
-
Cytochrome c oxidase I (COI)
-
- Keywords (n/a)
-
-
Southern hemisphere moth
-
- Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type.xml)
-
-
Occurrence
-
- Keywords (GBIF Dataset Subtype Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_subtype.xml)
-
-
Specimen
-
Geographic Coverage
- Geographic Description
-
Continental Portugal.
Bounding Box
- West Bounding Coordinate
-
-8.785
- East Bounding Coordinate
-
-8.59
- North Bounding Coordinate
-
40.037
- South Bounding Coordinate
-
39.933
Temporal Coverage
- Single Date Time
-
2014-09-14
Taxonomic Coverage
- General Taxonomic Coverage
-
This dataset is composed of one specimen identified as Borkhausenia crimnodes (Lepidoptera, Oecophoridae), a moth species.
Taxonomic Classification
- Taxonomic Rank Name
-
Kingdom
- Taxonomic Rank Value
-
Animalia
Taxonomic Classification
- Taxonomic Rank Name
-
Phylum
- Taxonomic Rank Value
-
Arthropoda
Taxonomic Classification
- Taxonomic Rank Name
-
Class
- Taxonomic Rank Value
-
Insecta
Taxonomic Classification
- Taxonomic Rank Name
-
Order
- Taxonomic Rank Value
-
Lepidoptera
Taxonomic Classification
- Taxonomic Rank Name
-
Family
- Taxonomic Rank Value
-
Oecophoridae
License Information
- Intellectual Rights
-
This work is licensed under a
Creative Commons Attribution (CC-BY) 4.0 License
.
Distribution
Additional Metadata
Metadata
GBIF Metadata Block
- Date Stamp
-
2021-11-29T09:06:22Z
- Citation
-
Corley M, Ferreira S, Lvovsky A L, Rosete J, Sousa P, Beja P (2020). The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. Version 1.1. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Occurrence dataset https://doi.org/10.15468/8yge73 accessed via GBIF.org on 2021-11-29.
- Bibliography
-
Corley, M.F.V., Ferreira, S., Lvovsky, A.L. Rosete, J. (2017). Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal. Nota Lepidopterologica, 40(1): 15–24.
Meyrick, E. (1912). Descriptions of South American Micro-Lepidoptera. Transactions of the Entomological Society of London 1911: 673–718.
- Collection
-
4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970
InBIO Barcoding Initiative
- Speciment Preservation Method
-
ALCOHOL
- JGTI Curatorial Unit
-
Voucher tube
1
1
- JGTI Curatorial Unit
-
DNA extractions
1
1
Project
• Project
- Title
-
The InBIO Barcoding Initiative Database: Borkhausenia crimnodes Meyrick, 1912 (Lepidoptera, Oecophoridae), a southern hemisphere species resident in Portugal
Personnel
Individual Name
- Given Name
-
Martin
- Surname
-
Corley
- User ID
-
0000-0003-4240-8007
- Role
-
AUTHOR
Personnel
Individual Name
- Given Name
-
Sónia
- Surname
-
Ferreira
- User ID
-
0000-0002-6884-3966
- Role
-
AUTHOR
Personnel
Individual Name
- Given Name
-
Alexander L.
- Surname
-
Lvovsky
- User ID
-
0000-0003-3165-6654
- Role
-
AUTHOR
Personnel
Individual Name
- Given Name
-
Jorge
- Surname
-
Rosete
- User ID
-
jorge-rosete-b34b4963
- Role
-
AUTHOR
Personnel
Individual Name
- Given Name
-
Pedro
- Surname
-
Sousa
- User ID
-
0000-0002-5859-9656
- Role
-
ORIGINATOR
Personnel
Individual Name
- Given Name
-
Pedro
- Surname
-
Beja
- User ID
-
0000-0001-8164-0760
- Role
-
AUTHOR
- Abstract
-
The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.
- Funding
-
InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER).
Study Area Description
- Descriptor
-
A single specimen was collected in Louriçal, Pombal, part of the Leiria District of Continental Portugal, in 2014.
Design Description
- Description
-
The specimen in this dataset was collected in a single locality in Continental Portugal. It was detected by direct search of the environment.
Methods
• Method
Method Step
- Description
-
The Borkhausenia crimnodes specimen was captured in a single locality of continental Portugal, during 2014.
Method Step
- Description
-
The specimen was captured by direct search of the environment. The captured specimen was preserved in 96% ethanol.
Method Step
- Description
-
The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Meyrick, 1912).
Method Step
- Description
-
A DNA barcode was sequenced from a tissue sample, one leg, that was removed. DNA was then extracted, and a 658 bp COI DNA barcode fragment was amplified and sequenced.
Method Step
- Description
-
The obtained sequence was submitted to BOLD and GenBank databases and the specimen morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
Method Step
- Description
-
Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 ( http://openrefine.org/).
Sampling
- Study Extent
-
A single specimen was collected in Louriçal, in Continental Portugal, in 2014.
- Sampling Description
-
The Borkhausenia crimnodes specimen was captured in continental Portugal in 2014, by direct search of the environment. The captured specimen was preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimen was morphologically identified.
qualityControl
- Description
-
The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 ( http://openrefine.org/).