ssdm R package -Stacked Species Distribution Modelling

The package allows to map species richness and endemism based on stacked species distribution models (SSDM). Individuals SDMs can be created using a single or multiple algorithms (ensemble SDMs). For each species, a SDM can yield a habitat suitability map, a binary map, a between-algorithm variance map, and can assess variable importance, algorithm accuracy, and between- algorithm correlation. Methods to stack individual SDMs include summing individual probabilities and thresholding then summing. Thresholding can be based on a specific evaluation metric or by drawing repeatedly from a Bernoulli distribution. The SSDM package also provides a user-friendly interface.

Default

Date ( Publication)
2020-02-28
Status
Completed
Author
  - Sylvain Schmitt

Creator
  - Robin Pouteau

Creator
  - Dimitri Justeau

Creator
  - Florian de Boissieu

Creator
  - Lukas Baumbach

Creator
  - Philippe Birnbaum

Keywords

modelling
Keywords

biogeography
Keywords

SSDM
Keywords

stacked species distribution modelling
Keywords

ecological niche models
Keywords

ENMs
Keywords

R
Access constraints
License
Use limitation

https://cran.r-project.org/web/licenses/GPL-3

OnLine resource
CRAN link (

WWW:LINK-1.0-http--link

 )
Required Services

R (>= 3.2.2)
Topic Category
Species distribution
Service Category

data processing
Service Category

modelling
Service Category

data collection and preparation
Service Category

niche calculation
Service Language
eng
Service TRL
TRL 9 – Actual system proven in operational environment
Service User Manual

https://cran.r-project.org/web/packages/SSDM/SSDM.pdf

Metadata

File identifier
3d83a225-d7b4-4c25-9e3f-53076aa5a285 XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

0.2.8
 
 

Overviews

overview
sdmpredictors.jpg

Spatial extent

Keywords



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