• Metadata Catalogue
  •   Search
  •   Map

The InBIO Barcoding Initiative Database: Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881)

The dataset contains one record of the species Cochylimorpha punctiferana (Ragonot, 1881) (Lepidoptera, Tortricidae) collected in continental Portugal in 2016.The study of this specimen resulted in the resurrection of the Portuguese endemic species C. punctiferana from synonymy with C. discopunctana (Eversmann, 1844) based on clear differences in female genitalia and DNA barcode by Corley et al. (2020). A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).

  • Default
  • Project
  • Methods
  • Data Tables

Default

Identification

Alternate Identifier

3f23468a-fdd7-4327-8178-5bafc023eb40

Publication Date
2021-01-05
Title

The InBIO Barcoding Initiative Database: Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881)

Abstract

The dataset contains one record of the species Cochylimorpha punctiferana (Ragonot, 1881) (Lepidoptera, Tortricidae) collected in continental Portugal in 2016.The study of this specimen resulted in the resurrection of the Portuguese endemic species C. punctiferana from synonymy with C. discopunctana (Eversmann, 1844) based on clear differences in female genitalia and DNA barcode by Corley et al. (2020). A tissue sample, one leg, was removed to be used for DNA extraction. Sequencing of the 658 bp COI DNA barcode was conducted within the InBIO Barcoding Initiative (IBI) and the DNA sequence was submitted to BOLD (Barcode of Life Data System) and GenBank databases. The preserved specimen and DNA extract are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).

purpose

The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.

Dataset Language

ENGLISH

 
Dataset Creator
  Martin Corley (Researcher)

Pucketty Farm Cottage

,

Faringdon

,

Oxfordshire

,

SN7 8JP

,

UNITED_KINGDOM

Dataset Creator
  CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7

,

Vairão

,

Porto

,

4485-661

,

PORTUGAL

Dataset Creator
  CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Post-Doc Researcher)

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7

,

Vairão

,

Porto

,

4485-661

,

PORTUGAL

Dataset Creator
  CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7

,

Vairão

,

Porto

,

4485-661

,

PORTUGAL

Metadata Provider
  Martin Corley (Researcher)

Pucketty Farm Cottage

,

Faringdon

,

Oxfordshire

,

SN7 8JP

,

UNITED_KINGDOM

Metadata Provider
  CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7

,

Vairão

,

Porto

,

4485-661

,

PORTUGAL

Metadata Provider
  CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Coordinating Researcher)

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7

,

Vairão

,

Porto

,

4485-661

,

PORTUGAL

Metadata Provider
  CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7

,

Vairão

,

Porto

,

4485-661

,

PORTUGAL

Dataset Contact
  CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7

,

Vairão

,

Porto

,

4485-661

,

PORTUGAL

Dataset Contact
  CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)

Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7

,

Vairão

,

Porto

,

4485-661

,

PORTUGAL

Keywords (n/a)
  • Lepidoptera

Keywords (n/a)
  • Species

Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type.xml)
  • Occurrence

Keywords (n/a)
  • Cytochrome c oxidase I (COI)

Keywords (n/a)
  • DNA barcode

Keywords (n/a)
  • Continental Portugal

Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type_2015-07-10.xml)
  • Occurrence

Geographic Coverage

Geographic Description

Continental Portugal.

Bounding Box

West Bounding Coordinate

-7.573

East Bounding Coordinate

-6.902

North Bounding Coordinate

41.766

South Bounding Coordinate

40.326

Temporal Coverage

Range of Dates

Begin Date

2016-04-24

End Date

2016-04-24

Taxonomic Coverage

General Taxonomic Coverage

This dataset is composed of one specimen identified as Cochylimorpha punctiferana (Ragonot, 1881) (Lepidoptera, Tortricidae), a moth species.

Taxonomic Classification

Taxonomic Rank Name

Kingdom

Taxonomic Rank Value

Animalia

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Arthropoda

Taxonomic Classification

Taxonomic Rank Name

Class

Taxonomic Rank Value

Insecta

Taxonomic Classification

Taxonomic Rank Name

Order

Taxonomic Rank Value

Lepidoptera

Taxonomic Classification

Taxonomic Rank Name

Family

Taxonomic Rank Value

Tortricidae

License Information

Intellectual Rights

This work is licensed under a

Creative Commons Attribution (CC-BY) 4.0 License

.

 

Distribution

Online

URL
http://www.boldsystems.org/index.php/Public_SearchTerms?query=DS-IBILP2
 

Additional Metadata

Metadata

GBIF Metadata Block

Date Stamp

2021-11-29T09:08:06Z

Citation

Corley M, Ferreira S, Sousa P, Beja P (2021). The InBIO Barcoding Initiative Database: Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881). Version 1.2. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Occurrence dataset https://doi.org/10.15468/4u34gh accessed via GBIF.org on 2021-11-29.

Bibliography

CORLEY, M. F. V. FERREIRA, S., 2020. Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881) stat. rev., a neglected Portuguese species (Lepidoptera: Tortricidae). SHILAP Revista de Lepidopterología, 48 (189): 147-151.

KENNEL, J., 1908-1921. Die palaearktischen Tortriciden.– Zoologica, 21(54): 1-742.

KENNEL, J., 1913. Die palaearktischen Tortriciden 3.– Zoologica, 21(54): 233-397.

RAGONOT, E. L., 1881. Notes on the entomology of Portugal. IV. Lepidoptera (continued). Micro-lepidoptera (except Tineina) collected by the Rev. A. E. Eaton in 1880 with descriptions of new species.– Entomologist’s Monthly Magazine, 17: 229-233.

RAZOWSKI, J., 1970. Cochylidae.– In H. G. AMSEL, F. GREGOR H. REISSER, (Eds.). Microlepidoptera Palaearctica, 3: XIV - 528 pp., 161 pls. Verlag Georg Fromme Co. Wien.

RAZOWSKI, J., 2002. Tortricidae of Europe. Olethreutinae, 2: 319 pp. Frantisek Slamka, Bratislava.

RAZOWSKI, J., 2009. Tortricidae of the Palaearctic Region. Cochylini, 2: 1-195 pp. Frantisek Slamka, Bratislava.

Logo URL
https://cibio.up.pt/upload/image/logotipos/2-logo.png
Collection

CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal

4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970

InBIO Barcoding Initiative

Speciment Preservation Method

ALCOHOL

JGTI Curatorial Unit

Voucher tube

1

1

JGTI Curatorial Unit

DNA extractions

1

1

 

Project

• Project

Title

The InBIO Barcoding Initiative Database: Taxonomic notes on Portuguese Microlepidoptera II. Cochylimorpha punctiferana (Ragonot, 1881)

Personnel

Individual Name

Given Name

Pedro

Surname

Beja

User ID

0000-0001-8164-0760

Role

AUTHOR

Personnel

Individual Name

Given Name

Martin

Surname

Corley

User ID

0000-0003-4240-8007

Role

AUTHOR

Personnel

Individual Name

Given Name

Sónia

Surname

Ferreira

User ID

0000-0002-6884-3966

Role

AUTHOR

Personnel

Individual Name

Given Name

Pedro

Surname

Sousa

User ID

0000-0002-5859-9656

Role

ORIGINATOR

Abstract

The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.

Funding

InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981 and by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER).

Study Area Description

Descriptor

A single specimen was collected in Vale da Porca, Macedo de Cavaleiros, part of the Bragança district of Continental Portugal, in 2016.

Design Description

Description

The specimen in this dataset was collected in a single locality in Continental Portugal.

 
 

Methods

• Method

Method Step

Description

The Cochylimorpha punctiferana specimen was captured in a single locality of continental Portugal, in 2016.

Method Step

Description

The captured specimen was preserved in 96% ethanol.

Method Step

Description

The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (CORLEY FERREIRA, 2020; KENNEL, 1908-1921, 1913; RAGONOT, 1881; RAZOWSKI, 1970; RAZOWSKI, 2002, 2009).

Method Step

Description

A DNA barcode was sequenced from a tissue sample, one leg, that was removed. DNA was then extracted, and a 658 bp COI DNA barcode fragment was amplified and sequenced.

Method Step

Description

The obtained sequence was submitted to BOLD and GenBank databases and the specimen morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.

Method Step

Description

Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 ( http://openrefine.org/).

Sampling

Study Extent

A single specimen was collected in Vale da Porca, in Continental Portugal, in 2016.

Sampling Description

The Cochylimorpha punctiferana specimen was captured in continental Portugal in 2016. The captured specimen was preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimen was morphologically identified.

qualityControl

Description

The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 ( http://openrefine.org/).