ENMeval R package - Automated Tuning and Evaluations of Ecological Niche Models

The package runs ecological niche models over all combinations of user-defined settings (i.e., tuning), performs cross validation to evaluate models, and returns data tables to aid in selection of optimal model settings that balance goodness-of-fit and model complexity. Moreover, it provides functions to partition data spatially (or not) for cross validation, to plot multiple visualizations of results, to run null models to estimate significance and effect sizes of performance metrics, and to calculate niche overlap between model predictions, among others. The package was originally built for Maxent models, but the current version allows possible extensions for any modeling algorithm.

Default

Date ( Publication)
2023-01-07
Status
Completed
Author
  - Jamie M. Kass

Creator
  - Robert Muscarella

Creator
  - Peter J. Galante

Creator
  - Corentin Bohl

Creator
  - Gonzalo E. Buitrago- Pinilla

Creator
  - Robert A. Boria

Creator
  - Mariano Soley-Guardia

Creator
  - Robert P. Anderson

Keywords

modelling
Keywords

Ecological Niche Models
Keywords

ENMs
Keywords

model evaluation
Keywords

cross validation
Keywords

R
Access constraints
License
Use limitation

https://cran.r-project.org/web/licenses/GPL-3

OnLine resource
CRAN link (

WWW:LINK-1.0-http--link

 )
Required Services

R (≥ 3.5.0)
Topic Category
Species distribution
Service Category

model evaluation
Service Category

model validation
Service Category

modelling
Service Language
eng
Service TRL
TRL 9 – Actual system proven in operational environment
Service Training

https://jamiemkass.github.io/ENMeval/articles/ENMeval-2.0-vignette.html

Service User Manual

https://cran.r-project.org/web/packages/ENMeval/ENMeval.pdf

Metadata

File identifier
4bc5007d-54fa-490a-8d66-1523d659b123 XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

2.0.4
 
 

Overviews

Spatial extent

Keywords



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