Species_occ.csv

This is the output file of Step 1 (Metabarcoding Runner) and the input file of Step 2 (Metabarcoding Syntax Normalizer) for the Metabarcoding workflow.

This file is a taxa table containing the number of DNA sequences assigned to each taxon detected using High Throughput Sequencing of environmental DNA samples.

Default

Identification

Alternate Identifier

52be722a-4372-40fb-a91a-cf11332f80be

Publication Date
2021-03-23
Title

Species_occ.csv

Abstract

This is the output file of Step 1 (Metabarcoding Runner) and the input file of Step 2 (Metabarcoding Syntax Normalizer) for the Metabarcoding workflow.

This file is a taxa table containing the number of DNA sequences assigned to each taxon detected using High Throughput Sequencing of environmental DNA samples.

 
Dataset Creator
Dataset Contact
Keywords ()

  • Taxa occurrence

  • Taxonomic identification

  • Taxonomic rank

  • Geographic coordinate

  • Investigator name

  • eDNA detections

  • Metabarcoding

  • IJI

Taxonomic Coverage

No information provided.

License Information

Intellectual Rights
 

Distribution

Online

A brief description of the the content of online URL.

Dataset

URL
https://sheet.zoho.eu/sheet/open/4clnvc91865942444416fbf75d946838820e7?sheet=occurrences_metabcrange=A1
 
 

Data Tables

• Data Table

Name

Species_occ

Physical

Data Format

Externally Defined Format

Format Name

CSV

Attribute List

Attribute

Name

occurrenceID

Label

Occurrence identifier

Definition

Unique identifier assigned to each taxon occurrence per eDNA sample processed

Standard Unit

Attribute

Name

scientificName

Label

Taxon designation

Definition

Scientific name of the taxon detected

Standard Unit

Attribute

Name

kingdom

Label

Kingdom

Definition

Specifies the kingdom of the taxon identified (e.g. Animalia, Plantae, Fungi etc..)

Standard Unit

Attribute

Name

taxonRank

Label

Taxon rank

Definition

Specifies the taxonomic rank of the taxon identified (e.g. species, genus, family, order, etc..)

Standard Unit

Attribute

Name

decimalLatitude

Label

Latitude

Definition

Latitude of the eDNA sampling site where the taxon was identified

Standard Unit

Decimal Degrees in WGS 84 coordinate system (EPSG:4326)

Attribute

Name

decimalLongitude

Label

Longitude

Definition

Longitude of the eDNA sampling site where the taxon was identified

Standard Unit

Decimal Degrees in WGS 84 coordinate system (EPSG:4326)

Attribute

Name

eventDate

Label

eDNA sampling date

Definition

Date of eDNA sample collection

Standard Unit

DD/MM/YYYY

Attribute

Name

recordedBy

Label

Name of the investigator (sampling)

Definition

Name of the investigator who carried out the eDNA sampling

Standard Unit

Attribute

Name

identifiedBy

Label

Name of the investigator (identification)

Definition

Name of the investigator who carried out the eDNA sequencing/analysis

Standard Unit