Species_occ.csv
This is the output file of Step 1 (Metabarcoding Runner) and the input file of Step 2 (Metabarcoding Syntax Normalizer) for the Metabarcoding workflow.
This file is a taxa table containing the number of DNA sequences assigned to each taxon detected using High Throughput Sequencing of environmental DNA samples.
Default
Identification
- Alternate Identifier
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52be722a-4372-40fb-a91a-cf11332f80be
- Publication Date
- 2021-03-23
- Title
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Species_occ.csv
- Abstract
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This is the output file of Step 1 (Metabarcoding Runner) and the input file of Step 2 (Metabarcoding Syntax Normalizer) for the Metabarcoding workflow.
This file is a taxa table containing the number of DNA sequences assigned to each taxon detected using High Throughput Sequencing of environmental DNA samples.
- Dataset Creator
- Dataset Contact
- Keywords ()
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Taxa occurrence
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Taxonomic identification
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Taxonomic rank
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Geographic coordinate
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Investigator name
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eDNA detections
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Metabarcoding
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IJI
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Taxonomic Coverage
License Information
- Intellectual Rights
Distribution
Online
- A brief description of the the content of online URL.
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Dataset
Data Tables
• Data Table
- Name
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Species_occ
Physical
Data Format
Externally Defined Format
- Format Name
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CSV
Attribute List
Attribute
- Name
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occurrenceID
- Label
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Occurrence identifier
- Definition
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Unique identifier assigned to each taxon occurrence per eDNA sample processed
- Standard Unit
Attribute
- Name
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scientificName
- Label
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Taxon designation
- Definition
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Scientific name of the taxon detected
- Standard Unit
Attribute
- Name
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kingdom
- Label
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Kingdom
- Definition
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Specifies the kingdom of the taxon identified (e.g. Animalia, Plantae, Fungi etc..)
- Standard Unit
Attribute
- Name
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taxonRank
- Label
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Taxon rank
- Definition
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Specifies the taxonomic rank of the taxon identified (e.g. species, genus, family, order, etc..)
- Standard Unit
Attribute
- Name
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decimalLatitude
- Label
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Latitude
- Definition
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Latitude of the eDNA sampling site where the taxon was identified
- Standard Unit
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Decimal Degrees in WGS 84 coordinate system (EPSG:4326)
Attribute
- Name
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decimalLongitude
- Label
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Longitude
- Definition
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Longitude of the eDNA sampling site where the taxon was identified
- Standard Unit
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Decimal Degrees in WGS 84 coordinate system (EPSG:4326)
Attribute
- Name
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eventDate
- Label
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eDNA sampling date
- Definition
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Date of eDNA sample collection
- Standard Unit
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DD/MM/YYYY
Attribute
- Name
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recordedBy
- Label
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Name of the investigator (sampling)
- Definition
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Name of the investigator who carried out the eDNA sampling
- Standard Unit
Attribute
- Name
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identifiedBy
- Label
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Name of the investigator (identification)
- Definition
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Name of the investigator who carried out the eDNA sequencing/analysis
- Standard Unit