Metadata Catalogue Metadata Catalogue https://metadatacatalogue.lifewatch.eu/ https://metadatacatalogue.lifewatch.eu//srv/eng/portal.opensearch https://metadatacatalogue.lifewatch.eu//srv/eng/rdf.search?any= eng Continents, countries, sea regions of the world. https://metadatacatalogue.lifewatch.eu//srv/eng/thesaurus.download?ref=external.place.regions ecoportal.fos_1.rdf https://metadatacatalogue.lifewatch.eu//srv/eng/thesaurus.download?ref=external.ecoportal.fos application/xml XML text/html HTML 55dfbb63-4304-4fa8-a7b6-17988e0b33df PEMA: a Pipeline for Environmental DNA Metabarcoding Analysis PEMA is a HPC-centered, containerized assembly of key metabarcoding analysis tools. It supports the downstream analysis of four marker genes (16S/18S rRNA, ITS and COI) but also, by allowing the user to train the classifiers with custom reference databases, it can be used for further marker genes. By combining state-of-the art technologies and algorithms with an easy to get-set-use framework, PEMA allows researchers to tune thoroughly each study thanks to roll-back checkpoints and on-demand partial pipeline execution features. metagenomics remote sensing modelling e-DNA Metabarcoding 16S 18S ITS COI Marker gene analysis Taxonomy assignment WWW:LINK-1.0-http--related https://doi.org/10.1093/gigascience/giaa022 WWW:LINK-1.0-http--link https://hub.docker.com/r/hariszaf/pema WWW:LINK-1.0-http--link https://datasets.datalad.org/?dir=/shub/hariszaf/pema 2020-03-12 2021-02-10 license Fully Open Access Institute of Marine Biology, Biotechnology and Aquaculture, Hellenic Centre for Marine Research Haris Zafeiropoulos