Integrated microbial NGC platform
IMNGS is a platform that uniformly and systematically screens for, retrieves, processes, and analyses all available prokaryotic 16S rRNA gene amplicon datasets from public repositories and uses them to build sample-specific sequence databases and OTU-based profiles. The retrieved information can be used to address questions of relevance in microbial ecology, for example with respect to the occurrence of specific microorganisms in different ecosystems or to perform targeted diversity studies. IMNGS also offers a complete pipeline for de novo analysis of a user's own raw amplicon sequencing data generated using the Illumina technology.
Due to the personalised nature of many functions and the high computational cost related to the performed tasks, only registered users can submit jobs (registration can be done via the IMNGS home page; regsiter there as a Guest to learn more about what it can do). The IMNGS web interface can then be used to: search and select datasets/samples (runs), create and launch jobs, and inspect the outputs of the jobs.
Developed by:
Ilias Lagkouvardos, Technical university of Munich (TUM)
Used data resources:
SRA repository amplicon studies, user query 16S sequence, user raw amplicon sequences
Used in tools:
USEARCH
Technology or platform:
Django, Python, PostgreSQL
Default
- Date ( Publication)
- 2019-08-14
- Status
- Completed
- Keywords
-
ASSEMBLE Plus
- Keywords
-
rRNA
- Keywords
-
Bioinformatics
- Keywords
-
Biodiversity
- Keywords
-
Calculation tool
- Keywords
-
metagenomics
- OnLine resource
-
IMNGS Web address
(
WWW:LINK-1.0-http--link
)
- Topic Category
- Species distribution
- Service Category
-
data analysis
- Service Category
-
data processing
- Service Language
- eng
- Service TRL
- TRL 9 – Actual system proven in operational environment
metadataMetadata
- File identifier
- 591a91b5-6939-4e27-a785-b5f14ad8b0c3 XML
- Metadata language
- en
- Hierarchy level
- Service
- Metadata Schema Version
-
Not available
