• LifeWatch ERIC Metadata Catalogue
  •  
  •  
  •  

GBIF NIS Verifier

This service aims at checking which taxa detected and identified from eDNA metabarcoding sequences are listed as NIS and which taxa are not (i.e. native or unrecorded NIS). This service uses available GBIF (Global Biodiversity Information Facility) records of NIS for each Country provided by the Invasive Species Specialist Group (ISSG).

it checks if a species is present in the checklist and if this is the case, the species is flagged as being invasive for that country by adding 1 (yes) or 0 (no) to the column isInChecklist of the data frame, and the checklist key or a note to the ref_checklistKey column, for the corresponding cases.

It represents the Step 3 of the Metabarcoding Workflow within the Internal Joint Initiative.

Default

Identification

Date ( Publication )
2021-03-23
Date ( Creation )
2019-07-04
Status
Under development / Pre operational
Version
1.0
Keywords
Non-native Invasive Species
Keywords
National checklist
Keywords
eDNA detections
Keywords
Taxa occurrence
Keywords
Metabarcoding
Keywords
IJI
Access constraints
License
Use limitation
The final license will be available soon.
Principal investigator
  CIBIO-InBIO - Ana Filipa Filipe
Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS
Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira
Principal investigator
  LifeWatch ERIC ICT Core - Juan Miguel GONZÁLEZ-ARANDA
 
Protocol
DOI
Operation name
sample_data_step_2_out.rdata
Function
Input file
Operation name
listChecklist.rdata
Function
Input file
Operation name
sample_data_step_3_out.rdata
Function
Output file
Service Category
data validation
Service Category
data analysis
Service Language
eng
Service TRL
TRL 7 – System prototype demonstration in operational environment
 

Overviews

Spatial extent

Keywords


Provided by

logo

Share on social sites

Access to the portal
Read here the full details and access to the data.

Associated resources

Not available


  •  
  •  
  •