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GBIF NIS Verifier

This service aims at checking which taxa detected and identified from eDNA metabarcoding sequences are listed as NIS and which taxa are not (i.e. native or unrecorded NIS). This service uses available GBIF (Global Biodiversity Information Facility) records of NIS for each Country provided by the Invasive Species Specialist Group (ISSG).

it checks if a species is present in the checklist and if this is the case, the species is flagged as being invasive for that country by adding 1 (yes) or 0 (no) to the column isInChecklist of the data frame, and the checklist key or a note to the ref_checklistKey column, for the corresponding cases.

It represents the Step 3 of the Metabarcoding Workflow within the Internal Joint Initiative.

Default

Date ( Publication)
2021-03-23
Date ( Creation)
2019-07-04
Status
Under development / Pre operational
Principal investigator
  CIBIO-InBIO - Ana Filipa Filipe

Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS

Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira

Principal investigator
  LifeWatch ERIC ICT Core - ICT Core Group

Keywords

biogeography

Keywords

metagenomics

Keywords

remote sensing

Keywords

Non-native Invasive Species

Keywords

National checklist

Keywords

eDNA detections

Keywords

Taxa occurrence

Keywords

Metabarcoding

Keywords

IJI

Access constraints
License
Use limitation

The final license will be available soon.

Protocol

DOI

Operation name

sample_data_step_2_out.rdata

Function

Input file

Operation name

listChecklist.rdata

Function

Input file

Operation name

sample_data_step_3_out.rdata

Function

Output file

Service Category

data validation

Service Category

data analysis

Service Category

data processing

Service Language
eng
Service TRL
TRL 7 – System prototype demonstration in operational environment
Service Helpdesk

https://helpdesk.lifewatch.eu/

Metadata

File identifier
5aacde7d-3698-4f23-a2d6-73e4d66fb48a XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

1.0

 
 

Overviews

overview
metagenomics.jpg

Spatial extent

Keywords



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