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Reference_db

This is one of the three input files required for running Step 1 (Metabarcoding Runner) of the Metabarcoding workflow. This file contains a list of species and reference genetic sequences that will be used for the taxonomic assignment of eDNA metabarcoding sequences. The other two input files for Step 1 are the "Fastq" file with sequences generated from High Throughput Sequencing of eDNA samples and the "Sample_metadata" with eDNA samples information.

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Default

Identification

Alternate Identifier

64b81b5f-c788-45c6-935c-b99f3fcf9535

Publication Date
2021-03-23
Title

Reference_db

Abstract

This is one of the three input files required for running Step 1 (Metabarcoding Runner) of the Metabarcoding workflow. This file contains a list of species and reference genetic sequences that will be used for the taxonomic assignment of eDNA metabarcoding sequences. The other two input files for Step 1 are the "Fastq" file with sequences generated from High Throughput Sequencing of eDNA samples and the "Sample_metadata" with eDNA samples information.

 
Dataset Creator
  CIBIO-InBIO - Ana Filipa Filipe (Researcher)

Dataset Contact
  CIBIO-InBIO - Ana Filipa Filipe (Researcher)

Keywords ()
  • DNA sequences

  • Genetic sequences

  • Reference sequences

  • Metabarcoding

  • IJI

Taxonomic Coverage

No information provided.

License Information

Intellectual Rights
 
 
 

Data Tables

• Data Table

Name

Reference database

Physical

Data Format

Externally Defined Format

Format Name

FASTA

Attribute List

No information provided.