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Data repository of multi-temporal high-resolution data products of ecosystem structure derived from country-wide airborne laser scanning surveys of the Netherlands

This data repository contains a set of multi-temporal data products of ecosystem structure derived from four national ALS surveys of the Netherlands (AHN1–AHN4) (folders: 1_AHN1, 2_AHN2, 3_AHN3, and 4_AHN4). These data products have been generated in the context of the EU project MAMBO (Modern Approaches to the Monitoring of Biоdiversity, https://doi.org/10.3897/rio.9.e116951). Four sets of 25 LiDAR-derived vegetation metrics representing ecosystem height, cover, and structural variability are provided at 10 m spatial resolution, providing valuable data sources for a wide range of ecological research and field beyond. A preview of all generated LiDAR metrics are also provided (folder: 5_Maps). All 25 LiDAR metrics were calculated using Laserfarm workflow ( https://laserfarm.readthedocs.io/en/latest/) (building on the user-extendable features from the “Laserchicken” software: https://laserchicken.readthedocs.io/en/latest/#features). All metrics are calculated with the normalized point cloud. More details on metric calculation are provided on GitHub (Laserchicken: https://github.com/eEcoLiDAR/laserchicken and Laserfarm: https://github.com/eEcoLiDAR/Laserfarm), as well as on the “Laserchicken” documentation page ( https://laserchicken.readthedocs.io/en/latest/). We also provided masks to minimize the influence of water surfaces, buildings and roads, powerlines and NA values in the data products (folder: 6_Masks). To supplement the generated data products, we also provided a set of raster layers that contains point/pulse density of each AHN survey and the DTM and DSM raster layers for each AHN dataset (folder: 7_Auxiliary_data). To test the robustness of the LiDAR metrics, we also compared the metrics generated from different pulse densities across different habitat types (folder: 8_Sensitivity_analysis). Two use cases demonstrated the utility of the presented data products: (use case 1) monitoring forest structural change across time using multi-temporal ALS data and (use case 2) comparison of vegetation structural difference within Natura 2000 sites. The used data are also provided (folder: 9_Use_case). Note that all the raster layers are provided at 10 m resolution under the local Dutch coordinate system “RD_new” (EPSG: 28992, NAP:5709). To gain more insights of the pre-classification accuracy of the AHN datasets, we also conducted a preliminary assessment of the effect of terrain filtering on vegetation change detection across AHN datasets (i.e. AHN2–AHN4). The data used in this analysis are made available (folder: 10_Ground_classification).

Default

IdentificationAbout this resource

Alternate Identifier

818ec4db-e66b-486f-aff3-98d6f113a714

Publication Date
2025-04-28
Title

Data repository of multi-temporal high-resolution data products of ecosystem structure derived from country-wide airborne laser scanning surveys of the Netherlands

Short Name
Abstract

This data repository contains a set of multi-temporal data products of ecosystem structure derived from four national ALS surveys of the Netherlands (AHN1–AHN4) (folders: 1_AHN1, 2_AHN2, 3_AHN3, and 4_AHN4). These data products have been generated in the context of the EU project MAMBO (Modern Approaches to the Monitoring of Biоdiversity, https://doi.org/10.3897/rio.9.e116951). Four sets of 25 LiDAR-derived vegetation metrics representing ecosystem height, cover, and structural variability are provided at 10 m spatial resolution, providing valuable data sources for a wide range of ecological research and field beyond. A preview of all generated LiDAR metrics are also provided (folder: 5_Maps). All 25 LiDAR metrics were calculated using Laserfarm workflow ( https://laserfarm.readthedocs.io/en/latest/) (building on the user-extendable features from the “Laserchicken” software: https://laserchicken.readthedocs.io/en/latest/#features). All metrics are calculated with the normalized point cloud. More details on metric calculation are provided on GitHub (Laserchicken: https://github.com/eEcoLiDAR/laserchicken and Laserfarm: https://github.com/eEcoLiDAR/Laserfarm), as well as on the “Laserchicken” documentation page ( https://laserchicken.readthedocs.io/en/latest/). We also provided masks to minimize the influence of water surfaces, buildings and roads, powerlines and NA values in the data products (folder: 6_Masks). To supplement the generated data products, we also provided a set of raster layers that contains point/pulse density of each AHN survey and the DTM and DSM raster layers for each AHN dataset (folder: 7_Auxiliary_data). To test the robustness of the LiDAR metrics, we also compared the metrics generated from different pulse densities across different habitat types (folder: 8_Sensitivity_analysis). Two use cases demonstrated the utility of the presented data products: (use case 1) monitoring forest structural change across time using multi-temporal ALS data and (use case 2) comparison of vegetation structural difference within Natura 2000 sites. The used data are also provided (folder: 9_Use_case). Note that all the raster layers are provided at 10 m resolution under the local Dutch coordinate system “RD_new” (EPSG: 28992, NAP:5709). To gain more insights of the pre-classification accuracy of the AHN datasets, we also conducted a preliminary assessment of the effect of terrain filtering on vegetation change detection across AHN datasets (i.e. AHN2–AHN4). The data used in this analysis are made available (folder: 10_Ground_classification).

Dataset Language

en

 
Dataset Creator
  University of Amsterdam - Yifang Shi ()

Dataset Creator
  University of Amsterdam - Wang Jinhu ()

Dataset Creator
  University of Amsterdam - W. Daniel Kissling (Associate Professor)

Metadata Provider
  LifeWatch ERIC - Lucia Vaira (Service Centre ICT Coordinator)

Dataset Contact
  University of Amsterdam - Yifang Shi ()

Keywords (None)
  • LiDAR

  • Ecosystem structure

  • Airborne laser scanning

  • Jupyter Notebook

  • Python

  • R

  • Vegetation height

  • Vegetation cover

  • Vegetation structural variability

  • AHN

  • Powerline

  • Multi-temporal

  • Change detection

  • EBV

  • Point cloud

  • High performance computing

  • Laserfarm

  • Laserchicken

Geographic Coverage

Geographic Description

Bounding Box

West Bounding Coordinate
East Bounding Coordinate
North Bounding Coordinate
South Bounding Coordinate

Bounding Altitudes

Minimum
Maximum
Unit

Temporal Coverage

Range of Dates

Begin Date
End Date

resourceLicensesLicense Information

Intellectual Rights

CC-BY4.0

Resource License

License Name

Creative Commons Attribution 4.0 International

URL
https://creativecommons.org/licenses/by/4.0/legalcode
Acknowledgements
 

Distribution

Online

A brief description of the the content of online URL.

DOI

URL
https://zenodo.org/records/15261042

Distribution

Online

A brief description of the the content of online URL.

Zenodo

URL
https://zenodo.org/records/15261042

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Online

A brief description of the the content of online URL.

Data paper

URL
https://doi.org/10.5194/essd-17-3641-2025

Distribution

Online

A brief description of the the content of online URL.

Jupyter Notebooks for processing AHN datasets

URL
https://github.com/ShiYifang/AHN

Distribution

Online

A brief description of the the content of online URL.

Laserfarm workflow repository

URL
https://github.com/eEcoLiDAR/Laserfarm

Distribution

Online

A brief description of the the content of online URL.

Laserchicken software repository

URL
https://github.com/eEcoLiDAR/laserchicken

Distribution

Online

A brief description of the the content of online URL.

Code for downloading AHN dataset

URL
https://github.com/ShiYifang/AHN/tree/main/AHN_downloading

Distribution

Online

A brief description of the the content of online URL.

Code for generating masks for AHN datasets

URL
https://github.com/ShiYifang/AHN/tree/main/AHN_masks

Distribution

Online

A brief description of the the content of online URL.

Code for demonstration of ecological use cases

URL
https://github.com/ShiYifang/AHN/tree/main/Use_case

Distribution

Online

A brief description of the the content of online URL.

1_AHN1.zip

URL
https://zenodo.org/records/15261042/files/1_AHN1.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

2_AHN2.zip

URL
https://zenodo.org/records/15261042/files/2_AHN2.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

3_AHN3.zip

URL
https://zenodo.org/records/15261042/files/3_AHN3.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

4_AHN4.zip

URL
https://zenodo.org/records/15261042/files/4_AHN4.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

5_Maps.zip

URL
https://zenodo.org/records/15261042/files/5_Maps.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

6_Masks.zip

URL
https://zenodo.org/records/15261042/files/6_Masks.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

7_Auxiliary_data.zip

URL
https://zenodo.org/records/15261042/files/7_Auxiliary_data.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

8_Sensitivity_analysis.zip

URL
https://zenodo.org/records/15261042/files/8_Sensitivity_analysis.zip?download=11

Distribution

Online

A brief description of the the content of online URL.

9_Use_case.zip

URL
https://zenodo.org/records/15261042/files/9_Use_case.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

10_Ground_classification.zip

URL
https://zenodo.org/records/15261042/files/10_Ground_classification.zip?download=1

Distribution

Online

A brief description of the the content of online URL.

README.docx

URL
https://zenodo.org/records/15261042/files/README.docx?download=1
 
 

Project

• Project

Title

MAMBO - Modern Approaches to the Monitoring of BiOdiversity

Abstract

Funded by European Commission (MAMBO project: 101060639).

Personnel

Organization Name

Individual Name

Given Name
Surname
Position Name
 
 






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