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FAIRness Assessment
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Incidence of alien species in Italian habitats and ecosystems

This R code is used for data integration, data cleaning and data analyses of biodiversity datasets with native and alien species records. The analyses include the integration of five datasets with georeferenced records in different ecosystems (marine, transitional, freshwater and terrestrial). After data integration, the script runs a data cleaning process including a taxonomic check and a check of the species's alien status. The analytical part of the script includes the calculation and visualisation of species abundance and an assessment of the incidence of alien species across different EUNIS habitats and ecosystems.

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Date ( Creation)
2024-05-01
Date ( Publication)
2024-06-01
Status
On going / operational
Creator
  National Research Council of Italy (CNR), Research Institute on Terrestrial Ecosystems (IRET) - Cristina Di Muri

Point of contact
  National Research Council of Italy (CNR), Research Institute on Terrestrial Ecosystems (IRET) - Cristina Di Muri

Version

v2.0

Keywords

data management

Keywords

biodiversity

Keywords

alien species

Keywords

EUNIS habitat

Keywords

terrestrial ecosystem

Keywords

marine ecosystem

Keywords

freshwater ecosystem

Keywords

transitional ecosystem

Access constraints
License
Use limitation

http://creativecommons.org/licenses/by/4.0/

Other constraints

Restricted Access

OnLine resource
Launch the script here
OnLine resource
Alien species incidence in Italy
Operation name

Dataset_Biodiversity_Freshwaters_LifeWatch_2015.csv

Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/84a70617-3606-499d-bbe6-2b52ccf33392

Description

Biodiversity dataset of Italian freshwater ecosystems (lakes, rivers, and artificial sites) spanning 1951-2013, including 6715 occurrence records for 1884 species, with taxa ranging from prokaryotes to vertebrates and plants.

Function

Input

Operation name

Dataset_Biodiversity_Terrestrial_Habitats_LifeWatch_2015.csv

Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/29290d64-a840-4ffc-accf-5bf68deef233

Description

Biodiversity dataset of Italian terrestrial ecosystems, including 3386 occurrence records of both native and alien species across Italy.

Function

Input

Operation name

Dataset_Biodiversity_Terrestrial_Plants_and_Fungi_LifeWatch_2015.csv

Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/285eff33-55de-4d0e-8b7f-c995dc80478e

Description

Biodiversity dataset of Italian terrestrial plants and fungi, with gt;6000 occurrence records across 28 sites and 7 EUNIS habitats, covering both native and alien species.

Function

Input

Operation name

Dataset_Biodiversity_Marine_Lifewatch_2015.csv

Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/30d8844e-1774-4c63-89c4-4d858f88317d

Description

Biodiversity dataset of Italian marine ecosystems, with gt;12.200 occurrence records from 91 sites across 7 EUNIS habitats, covering both native and alien species.

Function

Input

Operation name

Dataset_Biodiversity_TransitionalWaters_LifeWatch_2015.csv

Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/98914415-765c-4650-b272-b16793231e8a

Description

Biodiversity dataset of Italian transitional waters, with gt;3.800 occurrence records from 23 sites across 4 EUNIS habitats, covering 9 species groups and both native and alien species.

Function

Input

Operation name

Incidence of alien species in Italian habitats and ecosystems - Service Output

Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/f2a3b4c0-5f1c-4f47-a2b1-8d90ce6778f1

Function

Output

Topic Category
Species distribution
Service Category

data integration

Service Category

data cleaning

Service Category

data analysis

Service Category

data curation

Service Category

data processing

Service Language
eng
Service TRL
TRL 2 – Technology concept formulated
Service Helpdesk

https://helpdesk.lifewatchitaly.eu

Metadata

File identifier
87a7bc3f-50c0-45f2-bc89-bc5f94a858b9 XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

1.0

 
 

Overviews

overview
data management.jpg

Spatial extent

Keywords



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