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Individual level trait-based dataset of phytoplankton communities from the coastal lagoons of the Mediterranean and Black Sea - v3

This dataset compiles individual-level phytoplankton taxonomic and morpho-functional information collected during autumn 2004 and spring 2005 across 14 coastal and transitional water systems located in five regions of the Mediterranean and Black Sea area: Albania, Bulgaria, Greece, Italy and Romania. It includes detailed records of species occurrence, cell density, geometric cell shapes, biovolume, carbon content and biomass estimates. The dataset captures spatial and seasonal variability in phytoplankton community composition, phytoplankton traits and biomass under contrasting ecological conditions.

Default

IdentificationAbout this resource

Alternate Identifier

8e5f54dd-4413-44bb-8991-35736fb214b9

Publication Date
2026-01-29
Title

Individual level trait-based dataset of phytoplankton communities from the coastal lagoons of the Mediterranean and Black Sea - v3

Abstract

This dataset compiles individual-level phytoplankton taxonomic and morpho-functional information collected during autumn 2004 and spring 2005 across 14 coastal and transitional water systems located in five regions of the Mediterranean and Black Sea area: Albania, Bulgaria, Greece, Italy and Romania. It includes detailed records of species occurrence, cell density, geometric cell shapes, biovolume, carbon content and biomass estimates. The dataset captures spatial and seasonal variability in phytoplankton community composition, phytoplankton traits and biomass under contrasting ecological conditions.

purpose

This dataset was also used for case study within the Phytoplankton Virtual Research Environment, where it served as a reference for data harmonization, trait-based integration and community-level analyses.

Dataset Language

English

 
Dataset Creator
  University of Salento - Alberto Basset (Full professor)

Metadata Provider
  National Research Council (CNR), Institute of Research on Terrestrial Ecosystems (IRET) - Jessica Titocci (Research Technologist)

Metadata Provider
  University of Salento - Maira Laraib (PhD student)

Associated Party

Information Manager

  University of Salento - Martina Pulieri (Research assistant)

Associated Party

Custodian Steward

  National Research Council (CNR), Institute of Research on Terrestrial Ecosystems (IRET) - Ilaria Rosati (Technologist)

Dataset Contact
  University of Salento - Alberto Basset (Full professor)

Keywords (Annex I habitats for Natura 2000)
  • Coastal lagoons

Keywords (Environmental Thesaurus)
  • biodiversity

Keywords (Traits Thesaurus)
  • Microphytoplankton

  • Nanophytoplankton

  • Cell size

  • Morphological trait

Geographic Coverage

Geographic Description

Mediterranean and Black Sea coastal lagoons of Albania, Bulgaria, Greece, Italy and Romania.

Bounding Box

West Bounding Coordinate

10.7640205282

East Bounding Coordinate

29.7132398146

North Bounding Coordinate

47.0818731873

South Bounding Coordinate

34.7052260662

Temporal Coverage

Range of Dates

Begin Date

2004-01-01

End Date

2005-12-31

Taxonomic Coverage

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Charophyta

Taxon ID

KZS5S

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Chlorophyta

Taxon ID

CGV7L

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Ciliophora

Taxon ID

3H

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Cryptista

Taxon ID

3N

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Cyanobacteria

Taxon ID

CNPLM

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Dinoflagellata

Taxon ID

D3MZ9

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Euglenophyta

Taxon ID

4B

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Haptophyta

Taxon ID

4P

Taxonomic Classification

Taxonomic Rank Name

Phylum

Taxonomic Rank Value

Heterokontophyta

Taxon ID

370437

resourceLicensesLicense Information

Intellectual Rights

Free for use, including sharing and adaptation, by all individuals provided that the owners are acknowledged in any use or publication.

Resource License

License Name

Creative Commons Attribution 4.0 International License

URL
https://creativecommons.org/licenses/by/4.0/
 

Distribution

Online

A brief description of the the content of online URL.

DOI

URL
https://doi.org/10.48372/x9qx-4t72

Online

A brief description of the the content of online URL.

Info and download page on LifeWatch Italy Data Portal

URL
https://data.lifewatchitaly.eu/handle/123456789/326359.3

Online

A brief description of the the content of online URL.

Previous version of this record (v1), last update: March, 2026

URL
https://metadatacatalogue.lifewatchitaly.eu/geonetwork/srv/eng/catalog.search#/metadata/664e8015-1a16-4fff-82f9-7904e5b42226

Online

A brief description of the the content of online URL.

Previous version of this record (v2), last update: April, 2026

URL
https://metadatacatalogue.lifewatchitaly.eu/geonetwork/srv/eng/catalog.search#/metadata/02c8aa43-0a7e-4555-a863-0106df6db458
 
 

Project

• Project

Title

CADSES - Central Adriatic Danubian South-Eastern European Space

Personnel

Individual Name

Given Name

Alberto

Surname

Basset

Organization Name

University of Salento

Position Name

Full professor

Email

alberto.basset@unisalento.it

User ID

0000-0002-3603-9316

Role

Point Of Contact

Abstract

This dataset compiles individual-level phytoplankton taxonomic and morpho-functional information collected during autumn 2004 and spring 2005 across 14 coastal and transitional water systems located in five regions of the Mediterranean and Black Sea area: Albania, Bulgaria, Greece, Italy and Romania. It includes detailed records of species occurrence, cell density, geometric cell shapes, biovolume, carbon content and biomass estimates. The dataset captures spatial and seasonal variability in phytoplankton community composition, phytoplankton traits and biomass under contrasting ecological conditions.

Study Area Description

Descriptor

The INTERREG Programme is the most extensive programme in geographical terms, covering the territory of four European Union countries (Greece, Austria, Adriatic Italy and eastern Germany), the entire territory of the New Member States (Slovakia, the Czech Republic, Poland, Slovenia) and third countries representing the next enlargement of the European Union's borders to the east (Romania, part of Ukraine, Moldova, Bulgaria and the Balkan countries such as Croatia, Serbia-Montenegro, Macedonia, Albania and Bosnia and Herzegovina).

 
 

Methods

• Method

Method Step

Description

Phytoplankton taxonomic composition was assessed using the Utermöhl method (Utermöhl, 1958). Sub-samples ranging from 5 to 50 mL were left to sediment, after which they were analysed under an inverted microscope (Nikon T300E) equipped with a video-assisted image analysis system (L.U.C.I.A., Version 4.8, Laboratory Imaging Ltd., Prague) at 400× magnification. For each sub-sample, at least 400 cells of the most abundant phytoplankton species were counted, measured and identified to determine individual cell size and taxonomy. Rare species were identified by scanning the entire bottom area of the sedimentation chamber. The minimum cell size considered for counting was 5 µm. Taxonomic identification was performed using standard monographs, manuals and phytoplankton atlases. When species-level identification was not possible, cells were classified to the lowest reliable taxonomic level, using qualifiers such as sp., spp., or cf. to indicate their taxonomic affinity. Cell biovolume was calculated by assigning standard geometric shapes to the corresponding cellular morphology, including colonial, coenobial and filamentous forms where individual cells could not be distinguished. Carbon content and biovolume estimates were obtained following the allometric equations proposed by Menden-Deuer and Lessard (2000). For each ecosystem, information on physiographic characteristics (surface area and depth) was included. These include data on water transparency, dissolved oxygen, pH, temperature, nitrogen compounds, phosphorus compounds. The water’s physical characteristics were monitored using a multi-probe (YSI 556 MPS), while nutrient and chlorophyll-a concentrations were determined in accordance with Strickland and Parsons (1972) and Yentsch and Menzel (1963) respectively. The techniques used for their measurement are reported in Sangiorgio et al., (2008).

Sampling

Study Extent

During autumn 2004 and spring 2005, water samples for phytoplankton analysis were collected at each heterogeneous area. At each sampling point, four 500 mL water samples were taken at 0.5 m depth using a Ruttner bottle. Samples were transferred into PET bottles and immediately preserved with Lugol’s iodine solution (1% final concentration; 15 mL per litre of sample).

Sampling Description

Phytoplankton dataset was collected from the northern Mediterranean and western Black Sea lagoons.

 
 

Data Tables

• Data Table

Name

AbioticData_Mediterranean_BlackSea_CoastalLagoons_v1.2.csv

Physical

Object Name

AbioticData_Mediterranean_BlackSea_CoastalLagoons_v1.2.csv

Size

16165

Authentication

MD5:7b1bbe82d99df2d04c9c7d4778ba16d5

Character Encoding

UTF-8

Data Format

textFormat

1

column

;

Attribute List

Attribute

Name

catalogNumber

Label

Catalog Number

Definition

An identifier (preferably unique) for the record within the data set or collection.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/catalogNumber

Attribute

Name

country

Label

Country

Definition

The name of the country or major administrative unit in which the dcterms:Location occurs.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/country

Attribute

Name

locality

Label

Locality

Definition

The specific description of the place.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/locality

Attribute

Name

month

Label

Month

Definition

The integer month in which the dwc:Event occurred.

Measurement Scale

Measurement Type

dateTime

Measurement Domain

Code

MM

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/month

Attribute

Name

year

Label

Year

Definition

The four-digit year in which the dwc:Event occurred, according to the Common Era Calendar.

Measurement Scale

Measurement Type

dateTime

Measurement Domain

Code

YYYY

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/year

Attribute

Name

eventDate

Label

Event Date

Definition

The date-time or interval during which a dwc:Event occurred. For occurrences, this is the date-time when the dwc:Event was recorded. Not suitable for a time in a geological context.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/eventDate

Attribute

Name

parentEventID

Label

Parent Event ID

Definition

An identifier for the broader dwc:Event that groups this and potentially other dwc:Events.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/parentEventID

Attribute

Name

decimalLatitude

Label

Decimal Latitude

Definition

The geographic latitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive.

Standard Unit

degree

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/decimalLatitude

Attribute

Name

decimalLongitude

Label

Decimal Longitude

Definition

The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive.

Standard Unit

degree

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/decimalLongitude

Attribute

Name

anthropogenicDisturbance

Label

Anthropogenic disturbance

Definition

Disturbance brought about by human activity.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://w3id.org/inbio#_000092

Attribute

Name

ramsarSite

Label

Ramsar site

Definition

A Ramsar site is a wetland site designated to be of international importance under the Ramsar Convention.

Measurement Scale

Measurement Type

nominal

Measurement Domain

Code

yes

Definition

It is a Ramsar site

Measurement Domain

Code

no

Definition

It is not a Ramsar site

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://purl.obolibrary.org/obo/ENVO_00000365

Attribute

Name

natura2000Site

Label

Natura 2000 site

Definition

Natura 2000 sites are a European network of protected areas established to conserve rare or threatened habitats and wildlife species.

Measurement Scale

Measurement Type

nominal

Measurement Domain

Code

yes

Definition

It is a Natura 2000 site

Measurement Domain

Code

no

Definition

It is not a Natura 2000 site

Attribute

Name

localProtectionPlan

Label

Local protection plan

Definition

Local protection plan indicates the presence or absence of a local protection plan within the investigated ecosystem.

Measurement Scale

Measurement Type

nominal

Attribute

Name

area

Label

Area

Definition

The extent of a 2-dimensional surface enclosed within a boundary.

Standard Unit

kilometerSquared

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocabs.lter-europe.net/EnvThes/21533

Attribute

Name

outletLength

Label

Outlet length

Definition

The linear extent in space from one end of something to the other end, or the extent of something from beginning to end.

Standard Unit

kilometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://purl.obolibrary.org/obo/NCIT_C25334

Attribute

Name

outletWidth

Label

Outlet width

Definition

The extent or measurement of something from side to side.

Standard Unit

kilometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://purl.obolibrary.org/obo/NCIT_C25345

Attribute

Name

sinuosityIndex

Label

Sinuosity Index

Definition

Sinuosity index is a dimensionless geomorphic metric that quantifies the curvature of rivers, streams, and lagoons. It is commonly used to classify transitional water ecosystems, as channel curvature influences hydrodynamics and, consequently, the abundance and distribution of benthic macroinvertebrates and phytoplankton guilds.

Standard Unit

dimensionless

Measurement Scale

Measurement Type

ratio

Attribute

Name

tidalRange

Label

Tidal range

Definition

The difference in height between the high tide and the low tide.

Standard Unit

meter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/sandybeachthes/c_a0ef4653

Attribute

Name

waterBodyAmmonium

Label

Water body ammonium

Definition

Concentration of ammonium per unit volume of a river, estuary, sea or ocean by any method in filtered or unfiltered water.

Standard Unit

micromolePerLiter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocab.nerc.ac.uk/collection/P35/current/EPC00009

Attribute

Name

nitrite

Label

Nitrite

Definition

Concentration of nitrite nitrogen per unit volume of the water column.

Standard Unit

micromolePerLiter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/vrephytoplankton/c_813004bb

Attribute

Name

nitrate

Label

Nitrate

Definition

Concentration of nitrate nitrogen per unit volume of the water column.

Standard Unit

micromolePerLiter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/vrephytoplankton/c_7249c816

Attribute

Name

dissolvedInorganicNitrogen

Label

Dissolved inorganic nitrogen

Definition

The sum of nitrate, nitrite, and ammonium concentrations.

Standard Unit

micromolePerLiter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocabs.lter-europe.net/EnvThes/20833

Attribute

Name

phosphate

Label

Phosphate

Definition

Phosphate concentration in the water sample.

Standard Unit

micromolePerLiter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://vocabulary.actris.nilu.no/actris_vocab/phosphate

Attribute

Name

silicate

Label

Silicates

Definition

Concentrations of dissolved inorganic silicon usually as hydrosilicic acid (often called silicate) and biogenic silica.

Standard Unit

micromolePerLiter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocab.nerc.ac.uk/collection/P36/current/SLCATE/

Attribute

Name

depth

Label

Depth

Definition

Depth is the vertical distance below the surface.

Standard Unit

centimeter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocab.nerc.ac.uk/collection/P07/current/CFSN0721/

Attribute

Name

waterTemperature

Label

Water temperature

Definition

Water temperature measured in situ.

Standard Unit

celsius

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/vrephytoplankton/c_a343112a

Attribute

Name

conductivity

Label

Conductivity

Definition

The ability of an object to conduct an electric current and resistivity is a physical quantity that reflects the electrical conductivity of a material.

Standard Unit

microsiemens per centimeter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocab.nerc.ac.uk/collection/P14/current/GVAR0165/

Attribute

Name

totalDissolvedSolids

Label

Total dissolved solids

Definition

Total concentration of dissolved substances (such as calcium, magnesium, sodium, chlorides, sulfates, and bicarbonates) and small amounts of dissolved organic matter in water.

Standard Unit

microgramPerLiter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/vrephytoplankton/c_2b1486ad

Attribute

Name

salinity

Label

Salinity

Definition

Salinity is the saltiness or dissolved salt content of a body of water (see also soil salinity). Salinity is an important factor in determining many aspects of the chemistry of natural waters and of biological processes within it, and is a thermodynamic state variable that, along with temperature and pressure, governs physical characteristics like the density and heat capacity of the water.

Standard Unit

PSU

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocabs.lter-europe.net/EnvThes/10312

Attribute

Name

oxygenSaturation

Label

Oxygen saturation

Definition

Oxygen saturation in water measures dissolved oxygen (DO) relative to the maximum possible concentration.

Standard Unit

percent

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocabs.lter-europe.net/EnvThes/21458

Attribute

Name

dissolvedOxygen

Label

Dissolved oxygen

Definition

Dissolved oxygen (DO) is the amount of oxygen that is present in water.

Standard Unit

milligramPerLiter

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocabs.lter-europe.net/EnvThes/20851

Attribute

Name

pH

Label

pH

Definition

Minus the log of the hydrogen ion concentration (moles per litre) in the water column.

Standard Unit

dimensionless

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://vocab.nerc.ac.uk/collection/P09/current/PHPH/
numberOfRecords

93

• Data Table

Name

PhytoplanktonTraits_Mediterranean_BlackSea_CoastalLagoons_v1.2.1.csv

Physical

Object Name

PhytoplanktonTraits_Mediterranean_BlackSea_CoastalLagoons_v1.2.1.csv

Size

33731550

Authentication

MD5:8a5f002e99dcf5215b9f8160ae29fbca

Data Format

textFormat

1

column

,

Attribute List

Attribute

Name

catalogNumber

Label

Catalog Number

Definition

An identifier (preferably unique) for the record within the data set or collection.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/catalogNumber

Attribute

Name

organismQuantity

Label

Organism Quantity

Definition

A number or enumeration value for the quantity of dwc:Organisms.

Standard Unit

number

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
http://rs.tdwg.org/dwc/terms/organismQuantity

Attribute

Name

organismQuantityType

Label

Organism Quantity Type

Definition

he type of quantification system used for the quantity of dwc:Organisms.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasUnit
Value URI
http://rs.tdwg.org/dwc/terms/organismQuantityType

Attribute

Name

parentEventID

Label

Parent Event ID

Definition

An identifier for the broader dwc:Event that groups this and potentially other dwc:Events.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/parentEventID

Attribute

Name

eventID

Label

Event ID

Definition

An identifier for the set of information associated with a dwc:Event (something that occurs at a place and time). May be a global unique identifier or an identifier specific to the data set.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/eventID

Attribute

Name

country

Label

Country

Definition

The name of the country or major administrative unit in which the dcterms:Location occurs.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/country

Attribute

Name

countryCode

Label

Country Code

Definition

The standard code for the country in which the dcterms:Location occurs.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasCode
Value URI
http://rs.tdwg.org/dwc/terms/countryCode

Attribute

Name

locality

Label

Locality

Definition

The specific description of the place.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/locality

Attribute

Name

decimalLatitude

Label

Decimal Latitude

Definition

The geographic latitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are north of the Equator, negative values are south of it. Legal values lie between -90 and 90, inclusive.

Standard Unit

degree

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/decimalLatitude

Attribute

Name

decimalLongitude

Label

Decimal Longitude

Definition

The geographic longitude (in decimal degrees, using the spatial reference system given in dwc:geodeticDatum) of the geographic center of a dcterms:Location. Positive values are east of the Greenwich Meridian, negative values are west of it. Legal values lie between -180 and 180, inclusive.

Standard Unit

degree

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/decimalLongitude

Attribute

Name

month

Label

Month

Definition

The integer month in which the dwc:Event occurred.

Measurement Scale

Measurement Type

dateTime

Measurement Domain

Code

MM

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/month

Attribute

Name

year

Label

Year

Definition

The four-digit year in which the dwc:Event occurred, according to the Common Era Calendar.

Measurement Scale

Measurement Type

dateTime

Measurement Domain

Code

YYYY

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/year

Attribute

Name

eventDate

Label

Event Date

Definition

The date-time or interval during which a dwc:Event occurred.

Measurement Scale

Measurement Type

dateTime

Measurement Domain

Code

YYYY-MM

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/eventDate

Attribute

Name

verbatimIdentification

Label

Verbatim Identification

Definition

A string representing the taxonomic identification as it appeared in the original record.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/verbatimIdentification

Attribute

Name

phylum

Label

Phylum

Definition

The full scientific name of the phylum or division in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/phylum

Attribute

Name

subphylum

Label

Subphylum

Definition

The full scientific name of the subphylum in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://aims.fao.org/aos/agrovoc/c_331205

Attribute

Name

class

Label

Class

Definition

The full scientific name of the class in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/class

Attribute

Name

subclass

Label

Subclass

Definition

The full scientific name of the subclass in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://aims.fao.org/aos/agrovoc/c_331206

Attribute

Name

order

Label

Order

Definition

The full scientific name of the order in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/order

Attribute

Name

suborder

Label

Suborder

Definition

The full scientific name of the suborder in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://aims.fao.org/aos/agrovoc/c_331165

Attribute

Name

family

Label

Family

Definition

The full scientific name of the family in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/family

Attribute

Name

subfamily

Label

Subfamily

Definition

The full scientific name of the subfamily in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/subfamily

Attribute

Name

genus

Label

Genus

Definition

The full scientific name of the genus in which the dwc:Taxon is classified.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/genus

Attribute

Name

specificEpithet

Label

Specific Epithet

Definition

The name of the first or species epithet of the dwc:scientificName.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/specificEpithet

Attribute

Name

infraspecificEpithet

Label

Infraspecific Epithet

Definition

The name of the lowest or terminal infraspecific epithet of the dwc:scientificName, excluding any rank designation.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/infraspecificEpithet

Attribute

Name

scientificName

Label

Scientific Name

Definition

The full scientific name, with authorship and date information if known.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/scientificName

Attribute

Name

acceptedNameUsage

Label

Accepted Name Usage

Definition

The full name, with authorship and date information if known, of the currently valid (zoological) or accepted (botanical) dwc:Taxon.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/acceptedNameUsage

Attribute

Name

scientificNameAuthorship

Label

Scientific Name Authorship

Definition

The authorship information for the dwc:scientificName formatted according to the conventions of the applicable dwc:nomenclaturalCode.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/scientificNameAuthorship

Attribute

Name

taxonRank

Label

Taxon Rank

Definition

The taxonomic rank of the most specific name in the dwc:scientificName.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/taxonRank

Attribute

Name

measurementRemarks

Label

Measurement Remarks

Definition

Comments or notes accompanying the measurements.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#measurementFor
Value URI
http://rs.tdwg.org/dwc/terms/measurementRemarks

Attribute

Name

shape

Label

Shape

Definition

The approximate shape of an organism.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_d8b26f7b

Attribute

Name

taxonRemark

Label

Taxon Remarks

Definition

Comments or notes about the taxon or name.

Measurement Scale

Measurement Type

nominal

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#hasContext
Value URI
http://rs.tdwg.org/dwc/terms/taxonRemarks

Attribute

Name

cellLength

Label

Cell length

Definition

The total distance from point to point along the longest axis of a cell.

Standard Unit

micrometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_2453c25b

Attribute

Name

cellWidth

Label

Cell width

Definition

The shortest linear dimension of a cell, measured perpendicular to its length, from end to end along the shortest axis of the cell.

Standard Unit

micrometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_3b8b8532

Attribute

Name

a

Label

a

Definition

The linear dimension corresponding to the distance between two points (PATO:0000122). It is usually indicated by the alphabetical code a, and/or l. In particular, in the case of complex shapes, there is more than one length, identified by different alphanumeric codes a1, a2, a3, l1, l2, l3, l4.

Standard Unit

micrometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_2453c25b

Attribute

Name

b

Label

b

Definition

The linear dimension corresponding to the distance from one side of an object to the opposite side (PATO:0000921). It is usually indicated by the alphabetical code b or d. In particular, for complex shapes, there is more than one width, identified by different alphanumeric codes b1, b2, b3, b4, d1, d11, d2, d22, d3, d33, d4, d44.

Standard Unit

micrometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_3b8b8532

Attribute

Name

c

Label

c

Definition

The linear dimension measured through an object as opposed to its length or width (PATO:0000915). It is usually indicated by the alphabetical code c or h. In particular, for complex shapes, there is more than one thickness, identified by different alphanumeric codes c1, c2, c3, h1, h2, h3, h4.

Standard Unit

micrometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_99b35ac0

Attribute

Name

d

Label

d

Definition

The linear dimension corresponding to the distance from one side of an object to the opposite side (PATO:0000921). It is usually indicated by the alphabetical code b or d. In particular, for complex shapes, there is more than one width, identified by different alphanumeric codes b1, b2, b3, b4, d1, d11, d2, d22, d3, d33, d4, d44.

Standard Unit

micrometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_3b8b8532

Attribute

Name

h

Label

h

Definition

The linear dimension measured through an object as opposed to its length or width (PATO:0000915). It is usually indicated by the alphabetical code c or h. In particular, for complex shapes, there is more than one thickness, identified by different alphanumeric codes c1, c2, c3, h1, h2, h3, h4.

Standard Unit

micrometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_99b35ac0

Attribute

Name

density

Label

Density

Definition

The number of organisms, designated by taxonomic names (e.g. species, genus, family), per unit area or per unit volume.

Standard Unit

cell per litre

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_ddc0028f

Attribute

Name

biovolume

Label

Biovolume

Definition

Volume of an organism (cell or colony). It is calculated according to the geometric equations, after association of geometric shape to the real shape of the organism and measurements of linear dimensions (length, width). It is used for samples that are analysed by imaging systems.

Standard Unit

cubic micrometer

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_117cb3e2

Attribute

Name

carbonContent

Label

Carbon content

Definition

Carbon content determined directly as particulate organic carbon of individual organisms or bulk communities, or indirectly by converting biovolume to carbon using empirical or theoretically derived equations.

Standard Unit

picogram Carbon per cell

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_3251199b

Attribute

Name

biomass

Label

Biomass

Definition

The amount of living organic matter per unit area or per unit volume. It can be expressed in terms of biovolume, weight or carbon content and can be measured at different organisational levels.

Standard Unit

nanogram

Measurement Scale

Measurement Type

ratio

Annotation

Property URI
http://ecoinformatics.org/oboe/oboe.1.2/oboe-core.owl#containsMeasurementsOfType
Value URI
https://kos.lifewatch.eu/thesauri/traits/c_331cd569
numberOfRecords

104687

 
 






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