Metadata Catalogue
The InBIO Barcoding Initiative Database: Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats
The dataset contains eight records of moth specimens of the genus Ypsolopha collected from 2015 to 2017 in continental Portugal. The study of these specimens resulted in the description of a new species, Y. rhinolophi (Corley, 2019), present in northern Portugal and south-east France, similar to Y. alpella (Denis amp; Schiffermüller, 1775) and Y. lucella (Fabricius, 1775), based on clear differences in male and female genitalia and on DNA barcodes in Corley et al. (2019). Specimens were detected and captured by direct search of the environment during the day, with adults hand-netted and larvae reared to adulthood, and by night using mercury-vapor lamps to attract the insects. Captured specimens were identified to species level and preserved in 96% ethanol. A tissue sample, usually a leg, was collected from each individual, from which DNA was extracted. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences were deposited in BOLD (Barcode of Life Data System) and GenBank online databases. Preserved specimens and DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
Default
Identification
- Alternate Identifier
-
9813ea12-db95-4695-8c7a-b001e2ac5a2c
- Publication Date
- 2021-01-05
- Title
-
The InBIO Barcoding Initiative Database: Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats
- Abstract
-
The dataset contains eight records of moth specimens of the genus Ypsolopha collected from 2015 to 2017 in continental Portugal. The study of these specimens resulted in the description of a new species, Y. rhinolophi (Corley, 2019), present in northern Portugal and south-east France, similar to Y. alpella (Denis amp; Schiffermüller, 1775) and Y. lucella (Fabricius, 1775), based on clear differences in male and female genitalia and on DNA barcodes in Corley et al. (2019). Specimens were detected and captured by direct search of the environment during the day, with adults hand-netted and larvae reared to adulthood, and by night using mercury-vapor lamps to attract the insects. Captured specimens were identified to species level and preserved in 96% ethanol. A tissue sample, usually a leg, was collected from each individual, from which DNA was extracted. The DNA barcoding of these specimens was conducted within the InBIO Barcoding Initiative (IBI), funded by EnvMetaGen and PORBIOTA projects. DNA barcode sequences were deposited in BOLD (Barcode of Life Data System) and GenBank online databases. Preserved specimens and DNA extracts are deposited in the IBI collection at the CIBIO (Research Center in Biodiversity and Genetic Resources).
- purpose
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The InBIO Barcoding Initiative (IBI) aims to develop a reference collection of DNA barcoding sequences primarily covering Portuguese invertebrate taxa providing a tool in ecological studies.
- Dataset Language
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ENGLISH
- Dataset Creator
- Dataset Creator
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CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Vanessa Alves Mata (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Creator
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Metadata Provider
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Vanessa Alves Mata (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Sousa (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Metadata Provider
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Contact
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Pedro Beja (Coordinating Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Dataset Contact
-
CIBIO-InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto - Sónia Ferreira (Post-Doc Researcher)
Campus Agrário de Vairão, Rua Padre Armando Quintas, nº 7
,Vairão
,Porto
,4485-661
,PORTUGAL
- Keywords (n/a)
-
-
Lepidoptera
-
- Keywords (n/a)
-
-
Species
-
- Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type.xml)
-
-
Occurrence
-
- Keywords (n/a)
-
-
Cytochrome c oxidase I (COI)
-
- Keywords (n/a)
-
-
DNA barcode
-
- Keywords (n/a)
-
-
Continental Portugal
-
- Keywords (GBIF Dataset Type Vocabulary: http://rs.gbif.org/vocabulary/gbif/dataset_type_2015-07-10.xml)
-
-
Occurrence
-
Geographic Coverage
- Geographic Description
-
Continental Portugal.
Bounding Box
- West Bounding Coordinate
-
-8.413
- East Bounding Coordinate
-
-6.274
- North Bounding Coordinate
-
41.909
- South Bounding Coordinate
-
41.631
Temporal Coverage
Range of Dates
- Begin Date
-
2015-06-18
- End Date
-
2017-07-21
Taxonomic Coverage
- General Taxonomic Coverage
-
This dataset is composed of data relating to 8 Lepidoptera specimens. All specimens were determined to species level. All specimens belong to the genus Ypsolopha Latreille, 1796 and the family Ypsolophidae.
Taxonomic Classification
- Taxonomic Rank Name
-
Kingdom
- Taxonomic Rank Value
-
Animalia
Taxonomic Classification
- Taxonomic Rank Name
-
Phylum
- Taxonomic Rank Value
-
Arthropoda
Taxonomic Classification
- Taxonomic Rank Name
-
Class
- Taxonomic Rank Value
-
Insecta
Taxonomic Classification
- Taxonomic Rank Name
-
Order
- Taxonomic Rank Value
-
Lepidoptera
Taxonomic Classification
- Taxonomic Rank Name
-
Family
- Taxonomic Rank Value
-
Ypsolophidae
License Information
- Intellectual Rights
-
This work is licensed under a
Creative Commons Attribution (CC-BY) 4.0 License
.
Distribution
Additional Metadata
Metadata
GBIF Metadata Block
- Date Stamp
-
2021-11-29T09:02:46Z
- Citation
-
Corley M, Ferreira S, Mata V A, Sousa P, Beja P (2021). The InBIO Barcoding Initiative Database: Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats. Version 1.2. CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal. Occurrence dataset https://doi.org/10.15468/zbu2w8 accessed via GBIF.org on 2021-11-29.
- Bibliography
-
Clerck, C.A. (1759) Icones insectorum rariorum cum nominibus eorum trivialibus locisque e C. Linnaei Systemae Naturae allegatis, Stockholm, 21 pp., 55 pls.
Corley, M.F.V., Ferreira, S. Mata, V.A. (2019). Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats. Zootaxa, 4609(3): 565–573.
Denis, M. Schiffermüller, I. (1775) Ankündung eines systematischen Werkes von den Schmetterlingen der Wienergegend. Vienna, 324 pp.
Fabricius, J.C. (1775) Systema Entomologicae, sistens Insectorum classes, ordines, genera, species, adjectis, synonymis, locis, descriptionibus, observationibus. Flensburg, Lipsia, 832 pp.
Fabricius, J.C. (1787) Mantissa Insectorum sistens eorum species, nuper detectas adjectis characteribus generis, differentiis specificis emendationibus, observationibus. Vol. 2. Impensis Christ. Gottl. Proft, Hafniae, 382 pp.
Jin, Q., Wang, S.X. Li, H.H. (2013) Review of the genus Ypsolopha Latreille, 1796 from China. Zootaxa, 3705 (1), 1–91.
Linnaeus, C. (1761) Fauna Svecica. 2nd Edition. Laurentii Salvii, Stockholm, 578 pp.
- Collection
-
CIBIO (Research Center in Biodiversity and Genetic Resources) Portugal
4ec2b246-f5fa-4b90-9a8d-ddafc2a3f970
InBIO Barcoding Initiative
- Speciment Preservation Method
-
ALCOHOL
- JGTI Curatorial Unit
-
Voucher tube
1
8
- JGTI Curatorial Unit
-
DNA extractions
1
8
Project
• Project
- Title
-
The InBIO Barcoding Initiative Database: Ypsolopha rhinolophi sp. nov. (Lepidoptera: Ypsolophidae), a new species from Portugal and France unveiled by bats
Personnel
Individual Name
- Given Name
-
Pedro
- Surname
-
Beja
- User ID
-
0000-0001-8164-0760
- Role
-
AUTHOR
Personnel
Individual Name
- Given Name
-
Martin
- Surname
-
Corley
- User ID
-
0000-0003-4240-8007
- Role
-
AUTHOR
Personnel
Individual Name
- Given Name
-
Sónia
- Surname
-
Ferreira
- User ID
-
0000-0002-6884-3966
- Role
-
AUTHOR
Personnel
Individual Name
- Given Name
-
Vanessa Alves
- Surname
-
Mata
- User ID
-
0000-0003-3005-9030
- Role
-
AUTHOR
Personnel
Individual Name
- Given Name
-
Pedro
- Surname
-
Sousa
- User ID
-
0000-0002-5859-9656
- Role
-
ORIGINATOR
- Abstract
-
The InBIO Barcoding Initiative aims to develop a reference collection of DNA barcoding sequences covering Portuguese invertebrate taxa. Within the project, a special focus is afforded to insects, given their relevance to food webs, ecosystems functioning, high diversity and limited number of DNA barcoding sequences of interest.
- Funding
-
InBIO Barcoding Initiative is funded by the European Union’s Horizon 2020 Research and Innovation programme under grant agreement No 668981, by the project PORBIOTA — Portuguese E-Infrastructure for Information and Research on Biodiversity (POCI-01-0145-FEDER-022127), supported by Operational Thematic Program for Competitiveness and Internationalization (POCI), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (FEDER) and by EDP Biodiversity Chair, and is part of research conducted at the Long Term Research Site of Baixo Sabor (LTER_EU_PT_002).
Study Area Description
- Descriptor
-
Specimens were collected in two districts of continental Portugal, in a total of seven different localities. Sampling was conducted from 2015 to 2017.
Design Description
- Description
-
Specimens in this dataset were collected in field work carried out between 2015 to 2017. Specimens were captured by direct search of the environment during the day, and using mercury-vapor lamps by night.
Methods
• Method
Method Step
- Description
-
Sampling of specimens was done at seven different localities of continental Portugal, between 2015 and 2017. Specimens were detected and captured by direct search during the day, with adults hand-netted and larvae reared to adulthood, and by night using mercury-vapor lamps as lures.
Method Step
- Description
-
The captured specimen was preserved in 96% ethanol.
Method Step
- Description
-
The specimen was morphologically identified using a binocular stereoscopic microscope and resorting to available literature (Clerck, 1759; Corley, Ferreira Mata, 2019; Denis Schiffermüller, 1775; Fabricius, 1775, 1787; Jin, Wang Li, 2013; Linnaeus, 1761).
Method Step
- Description
-
DNA barcodes were sequenced from all specimens. For this, one leg was removed from each individual from which a 658 bp COI DNA barcode fragment was extracted, amplified and sequenced.
Method Step
- Description
-
The obtained sequences were submitted to BOLD and GenBank databases and the specimens’ morphological identification was contrasted with the results of the BLAST of the newly generated DNA barcode in BOLD Identification Engine.
Method Step
- Description
-
Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 ( http://openrefine.org/).
Sampling
- Study Extent
-
Specimens were collected in seven different localities of continental Portugal. Sampling was conducted from 2015 to 2017.
- Sampling Description
-
Sampling of specimens was done at seven different localities of continental Portugal. Sampling was conducted between 2015 to 2017. Captured specimens were preserved in 96% ethanol and stored at the InBIO Barcoding Initiative reference collection for downstream molecular analysis. The collected specimens were morphologically identified.
qualityControl
- Description
-
The DNA barcoded specimen morphological identification was contrasted with the results of the Blast of the newly generated DNA barcode in BOLD Identification Engine. Prior submission to GBIF, data was checked for errors and inconsistencies with OpenRefine 3.3 ( http://openrefine.org/).