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PEMA Converter

This service aims to reformat and produce final output in variuos formats for human and machine2machine reading.

It represents the Step 9 of the ARMS Workflow within the Internal Joint Initiative.

Default

Date ( Publication)
2021-03-29
Date ( Creation)
2019-07-04
Status
Under development / Pre operational
Principal investigator
  VLIZ - Katrina Exter

Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS

Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira

Principal investigator
  LifeWatch ERIC ICT Core - ICT Core Group

Keywords

data management

Keywords

metagenomics

Keywords

remote sensing

Keywords

output producer

Keywords

ARMS

Keywords

IJI

Keywords

data processing

Access constraints
License
Use limitation

The final license will be available soon.

Operation name

Unified_species.csv

Description

It is the output from the ARMS OTU Unifier.

Function

Input file

Operation name

Final_table.tsv

Web site

https://metadatacatalogue.lifewatch.eu/srv/eng/catalog.search#/metadata/0194b74c-5fb7-492e-aefc-c97944ee0e3e

Description

It is a CSV file with a the number of columns that depends on the number of sequences/samples that are processed in the PEMA run.

Function

Input file

Operation name

abund_table.csv

Function

Output file

Operation name

abund_table_no_dupls.csv

Function

Output file

Operation name

aggregation.csv

Function

Output file

Service Category

data processing

Service Language
eng
Service TRL
TRL 7 – System prototype demonstration in operational environment

Metadata

File identifier
b2424f84-1eba-4cb6-9798-f4275fd24a97 XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

1.0

 
 

Overviews

overview
metagenomics.jpg

Spatial extent

Keywords



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