LifeWatch ERIC Metadata Catalogue
Metabarcoding Workflow - Detection of Non-native Invasive Species with metabarcoding
The main aim of this workflow is to detect likely NIS species with metabarcoding.
Detailed questions that will be answer with this tool and for each metabarcoding sample are:
1) What was the taxonomic resolution achieved with the marker (species, genus, family) and pipeline used? And how many OTUs were not attributed to any taxa?
2) Which taxa were listed?
3) Which species are listed as nonnative invasive (NIS) in the checklist for the country published by GBIF?
4) Which species are not listed as NIS (i.e. N - native in the region/country or newNIS - new detected taxa)?
5) What is the number or reads of each taxa in the newNIS list?
6) How much does the species not listed as NIS overlap with its known distribution area?
Default
Identification
- Date ( Publication )
- 2021-03-18
- Date ( Creation )
- 2019-07-04
- Status
- Completed
- Version
- 1.0
- Access constraints
- Copyright
- OnLine resource
- Info page ( WWW:LINK-1.0-http--link )
