Metadata Catalogue
Sample_metadata.tsv
This is one of the three input files required for running Step 1 (Metabarcoding Runner) of the Metabarcoding workflow. This file in Darwin Core format ( https://dwc.tdwg.org/terms/) contains eDNA sample collection information including the location and the geographical coordinates of the eDNA sampling sites. The other two input files for Step 1 are the "Fastq" file with sequences generated from High Throughput Sequencing of eDNA samples and the "Reference_db" with reference sequences for the taxonomic assignment of eDNA sequences.
Default
Identification
- Alternate Identifier
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c3739804-b8b6-42d0-8a25-06b361092703
- Publication Date
- 2021-03-23
- Title
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Sample_metadata.tsv
- Abstract
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This is one of the three input files required for running Step 1 (Metabarcoding Runner) of the Metabarcoding workflow. This file in Darwin Core format ( https://dwc.tdwg.org/terms/) contains eDNA sample collection information including the location and the geographical coordinates of the eDNA sampling sites. The other two input files for Step 1 are the "Fastq" file with sequences generated from High Throughput Sequencing of eDNA samples and the "Reference_db" with reference sequences for the taxonomic assignment of eDNA sequences.
- Dataset Creator
- Dataset Contact
- Keywords ()
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Geographic coordinates
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Investigator name
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eDNA sampling identifier
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Metabarcoding
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IJI
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Taxonomic Coverage
License Information
- Intellectual Rights
Data Tables
• Data Table
- Name
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Metadata file
Physical
Data Format
Externally Defined Format
- Format Name
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CSV
Attribute List
Attribute
- Name
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eventID
- Label
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eDNA sampling event code
- Definition
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Unique identifier (code) of the eDNA sampling event (mandatory attribute)
- Standard Unit
Attribute
- Name
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fastq_file_names
- Label
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Names of the Fastq files
- Definition
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Names of the Fastq files associated to the eDNA sampling event (mandatory attribute)
- Standard Unit
Attribute
- Name
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decimalLatitude
- Label
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Latitude
- Definition
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Latitude of the eDNA sampling location (mandatory attribute)
- Standard Unit
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Decimal Degrees in WGS 84 coordinate system (EPSG:4326)
Attribute
- Name
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decimalLongitude
- Label
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Longitude
- Definition
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Longitude of the eDNA sampling location (mandatory attribute)
- Standard Unit
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Decimal Degrees in WGS 84 coordinate system (EPSG:4326)
Attribute
- Name
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recordedBy
- Label
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Name of the investigator (sampling)
- Definition
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Name of the investigator who carried out the eDNA sampling (mandatory attribute)
- Standard Unit
Attribute
- Name
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identifiedBy
- Label
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Name of the investigator (identification)
- Definition
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Name of the investigator who carried out the eDNA sequencing (mandatory attribute)
- Standard Unit
Attribute
- Name
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ednaType
- Label
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Type of eDNA sample
- Definition
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Type of environmental DNA sample used such as water, soil or faeces (optional attribute)
- Standard Unit
Attribute
- Name
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primers
- Label
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Primers
- Definition
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Name of the primers used for the DNA sequencing (optional attribute)
- Standard Unit
Attribute
- Name
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samplDay
- Label
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Sampling date
- Definition
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eDNA sampling date (optional attribute)
- Standard Unit
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DD/MM/YYYY
Attribute
- Name
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samplHour
- Label
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Sampling time
- Definition
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eDNA sampling time (optional attribute)
- Standard Unit
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hh:mm GMT
Attribute
- Name
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samplSize
- Label
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Sampling size
- Definition
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Amount of environmental sample collected (e.g. number of liters filtered or amount of soil) (optional attribute)
- Standard Unit