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Sample_metadata.tsv

This is one of the three input files required for running Step 1 (Metabarcoding Runner) of the Metabarcoding workflow. This file in Darwin Core format ( https://dwc.tdwg.org/terms/) contains eDNA sample collection information including the location and the geographical coordinates of the eDNA sampling sites. The other two input files for Step 1 are the "Fastq" file with sequences generated from High Throughput Sequencing of eDNA samples and the "Reference_db" with reference sequences for the taxonomic assignment of eDNA sequences.

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Default

Identification

Alternate Identifier

c3739804-b8b6-42d0-8a25-06b361092703

Publication Date
2021-03-23
Title

Sample_metadata.tsv

Abstract

This is one of the three input files required for running Step 1 (Metabarcoding Runner) of the Metabarcoding workflow. This file in Darwin Core format ( https://dwc.tdwg.org/terms/) contains eDNA sample collection information including the location and the geographical coordinates of the eDNA sampling sites. The other two input files for Step 1 are the "Fastq" file with sequences generated from High Throughput Sequencing of eDNA samples and the "Reference_db" with reference sequences for the taxonomic assignment of eDNA sequences.

 
Dataset Creator
  CIBIO-InBIO - Ana Filipa Filipe (Researcher)

Dataset Contact
  CIBIO-InBIO - Ana Filipa Filipe (Researcher)

Keywords ()
  • Geographic coordinates

  • Investigator name

  • eDNA sampling identifier

  • Metabarcoding

  • IJI

Taxonomic Coverage

No information provided.

License Information

Intellectual Rights
 
 
 

Data Tables

• Data Table

Name

Metadata file

Physical

Data Format

Externally Defined Format

Format Name

CSV

Attribute List

Attribute

Name

eventID

Label

eDNA sampling event code

Definition

Unique identifier (code) of the eDNA sampling event (mandatory attribute)

Standard Unit

Attribute

Name

fastq_file_names

Label

Names of the Fastq files

Definition

Names of the Fastq files associated to the eDNA sampling event (mandatory attribute)

Standard Unit

Attribute

Name

decimalLatitude

Label

Latitude

Definition

Latitude of the eDNA sampling location (mandatory attribute)

Standard Unit

Decimal Degrees in WGS 84 coordinate system (EPSG:4326)

Attribute

Name

decimalLongitude

Label

Longitude

Definition

Longitude of the eDNA sampling location (mandatory attribute)

Standard Unit

Decimal Degrees in WGS 84 coordinate system (EPSG:4326)

Attribute

Name

recordedBy

Label

Name of the investigator (sampling)

Definition

Name of the investigator who carried out the eDNA sampling (mandatory attribute)

Standard Unit

Attribute

Name

identifiedBy

Label

Name of the investigator (identification)

Definition

Name of the investigator who carried out the eDNA sequencing (mandatory attribute)

Standard Unit

Attribute

Name

ednaType

Label

Type of eDNA sample

Definition

Type of environmental DNA sample used such as water, soil or faeces (optional attribute)

Standard Unit

Attribute

Name

primers

Label

Primers

Definition

Name of the primers used for the DNA sequencing (optional attribute)

Standard Unit

Attribute

Name

samplDay

Label

Sampling date

Definition

eDNA sampling date (optional attribute)

Standard Unit

DD/MM/YYYY

Attribute

Name

samplHour

Label

Sampling time

Definition

eDNA sampling time (optional attribute)

Standard Unit

hh:mm GMT

Attribute

Name

samplSize

Label

Sampling size

Definition

Amount of environmental sample collected (e.g. number of liters filtered or amount of soil) (optional attribute)

Standard Unit