LifeWatch ERIC Metadata Catalogue
Sample_metadata.tsv
This is one of the three input files required for running Step 1 (Metabarcoding Runner) of the Metabarcoding workflow. This file in Darwin Core format (https://dwc.tdwg.org/terms/) contains eDNA sample collection information including the location and the geographical coordinates of the eDNA sampling sites. The other two input files for Step 1 are the "Fastq" file with sequences generated from High Throughput Sequencing of eDNA samples and the "Reference_db" with reference sequences for the taxonomic assignment of eDNA sequences.
Default
Identification
- Alternate Identifier
- c3739804-b8b6-42d0-8a25-06b361092703
- Publication Date
- 2021-03-23
- Title
- Sample_metadata.tsv
- Abstract
- This is one of the three input files required for running Step 1 (Metabarcoding Runner) of the Metabarcoding workflow. This file in Darwin Core format (https://dwc.tdwg.org/terms/) contains eDNA sample collection information including the location and the geographical coordinates of the eDNA sampling sites. The other two input files for Step 1 are the "Fastq" file with sequences generated from High Throughput Sequencing of eDNA samples and the "Reference_db" with reference sequences for the taxonomic assignment of eDNA sequences.
- Dataset Creator
- Dataset Contact
- Keywords ( )
-
- Geographic coordinates
- Investigator name
- eDNA sampling identifier
- Metabarcoding
- IJI
Taxonomic Coverage
No information provided.
License Information
- Intellectual Rights
Resource License
- License Name
- The final license will be available soon.
- URL
Data Tables
Data Tables
• Data Table
- Name
- Metadata file
Physicaldocument
Data Format
Externally Defined Format
- Format Name
- CSV
Attribute List
Attribute
- Name
- eventID
- Label
- eDNA sampling event code
- Definition
- Unique identifier (code) of the eDNA sampling event (mandatory attribute)
- Standard Unit
Attribute
- Name
- fastq_file_names
- Label
- Names of the Fastq files
- Definition
- Names of the Fastq files associated to the eDNA sampling event (mandatory attribute)
- Standard Unit
Attribute
- Name
- decimalLatitude
- Label
- Latitude
- Definition
- Latitude of the eDNA sampling location (mandatory attribute)
- Standard Unit
- Decimal Degrees in WGS 84 coordinate system (EPSG:4326)
Attribute
- Name
- decimalLongitude
- Label
- Longitude
- Definition
- Longitude of the eDNA sampling location (mandatory attribute)
- Standard Unit
- Decimal Degrees in WGS 84 coordinate system (EPSG:4326)
Attribute
- Name
- recordedBy
- Label
- Name of the investigator (sampling)
- Definition
- Name of the investigator who carried out the eDNA sampling (mandatory attribute)
- Standard Unit
Attribute
- Name
- identifiedBy
- Label
- Name of the investigator (identification)
- Definition
- Name of the investigator who carried out the eDNA sequencing (mandatory attribute)
- Standard Unit
Attribute
- Name
- ednaType
- Label
- Type of eDNA sample
- Definition
- Type of environmental DNA sample used such as water, soil or faeces (optional attribute)
- Standard Unit
Attribute
- Name
- primers
- Label
- Primers
- Definition
- Name of the primers used for the DNA sequencing (optional attribute)
- Standard Unit
Attribute
- Name
- samplDay
- Label
- Sampling date
- Definition
- eDNA sampling date (optional attribute)
- Standard Unit
- DD/MM/YYYY
Attribute
- Name
- samplHour
- Label
- Sampling time
- Definition
- eDNA sampling time (optional attribute)
- Standard Unit
- hh:mm GMT
Attribute
- Name
- samplSize
- Label
- Sampling size
- Definition
- Amount of environmental sample collected (e.g. number of liters filtered or amount of soil) (optional attribute)
- Standard Unit
