LifeWatch ERIC Metadata Catalogue
Metabarcoding Syntax Normalizer
This service represents the Step 2 of the Metabarcoding Workflow within the Internal Joint Initiative. It aims at converting the CSV into rdata. It takes as input the Species_occ.csv file (output of the Step 1 Metabarcoding Runner), verifies the checklists available for each country and retrieves the first one. It produces two rdata files, that will be the inputs for the Step 3 GBIF NIS Verifier of the Metabarcoding workflow.
Default
Identification
- Date ( Publication )
- 2021-03-23
- Date ( Creation )
- 2019-07-04
- Status
- Under development / Pre operational
- Version
- 1.0
- Keywords
- Environmental DNA
- Keywords
- Sampling information
- Keywords
- Taxa detection
- Keywords
- Occurrence data
- Keywords
- Metabarcoding
- Access constraints
- License
- Use limitation
- The final license will be available soon.
- Protocol
- DOI
- Operation name
- Species_occ.csv
- Description
- This file is a taxa table containing the number of DNA sequences assigned to each taxon detected using High Throughput Sequencing of environmental DNA samples.
- Function
- Input file
- Operation name
- sample_data_step_2_out.rdata
- Function
- Output file
- Operation name
- listChecklist.rdata
- Function
- Output file
- Service Category
- data processing
- Service Category
- data conversion
- Service Language
- eng
- Service TRL
- TRL 2 – Technology concept formulated
