Metadata Catalogue
Metabarcoding Syntax Normalizer
This service represents the Step 2 of the Metabarcoding Workflow within the Internal Joint Initiative. It aims at converting the CSV into rdata. It takes as input the Species_occ.csv file (output of the Step 1 Metabarcoding Runner), verifies the checklists available for each country and retrieves the first one. It produces two rdata files, that will be the inputs for the Step 3 GBIF NIS Verifier of the Metabarcoding workflow.
Default
- Date ( Publication)
- 2021-03-23
- Date ( Creation)
- 2019-07-04
- Status
- Under development / Pre operational
- Keywords
-
data management
- Keywords
-
metagenomics
- Keywords
-
remote sensing
- Keywords
-
Environmental DNA
- Keywords
-
Sampling information
- Keywords
-
Taxa detection
- Keywords
-
Occurrence data
- Keywords
-
Metabarcoding
- Access constraints
- License
- Use limitation
-
The final license will be available soon.
- Operation name
-
Species_occ.csv
- Description
-
This file is a taxa table containing the number of DNA sequences assigned to each taxon detected using High Throughput Sequencing of environmental DNA samples.
- Function
-
Input file
- Operation name
-
sample_data_step_2_out.rdata
- Function
-
Output file
- Operation name
-
listChecklist.rdata
- Function
-
Output file
- Service Category
-
data processing
- Service Category
-
data conversion
- Service Language
- eng
- Service TRL
- TRL 2 – Technology concept formulated
Metadata
- File identifier
- c9a718ce-b279-4c53-8418-234186984fec XML
- Metadata language
- en
- Hierarchy level
- Service
- Metadata Schema Version
-
1.0
