Parameter.tsv

This is an input parameter file used for running PEMA on COI marker gene data in the ARMS Internal Joint Initiative workflow.

It is a tsv file that can be uploaded in order to specify which sequence (which column gene_18S, gene_COI, gene_ITS) is chosen. It is a well-defined template and the user is required to modify certain fields only.

Default

Identification

Alternate Identifier
d1a99bb1-7d5f-4338-8dba-58b922ec42b2
Publication Date
2021-02-11
Title
Parameter.tsv
Abstract

This is an input parameter file used for running PEMA on COI marker gene data in the ARMS Internal Joint Initiative workflow.

It is a tsv file that can be uploaded in order to specify which sequence (which column gene_18S, gene_COI, gene_ITS) is chosen. It is a well-defined template and the user is required to modify certain fields only.

 
Dataset Creator
  Hellenic Centre for Marine Research - Christina Pavloudi (Scientist )
https://orcid.org/0000-0001-5106-6067
Metadata Provider
  Flanders Marine Institute (VLIZ) - Katrina Exter (Data Manager )
https://orcid.org/0000-0002-5911-1536
Dataset Contact
  Hellenic Centre for Marine Research - Christina Pavloudi (Scientist )
Keywords (none )
  • PEMA
  • targetLength
  • palindromeClipThreshold
  • DNA Metabarcoding Analysis
  • parameter

Geographic Coverage

Geographic Description

Bounding Box

West Bounding Coordinate
East Bounding Coordinate
North Bounding Coordinate
South Bounding Coordinate

Temporal Coverage

Range of Dates

Begin Date

2021-02-11

End Date

2021-02-11

Taxonomic Coverage

No information provided.

License Information

Intellectual Rights
CC BY

Resource License

License Name
Creative Commons
URL
https://creativecommons.org/licenses/by/2.0/
 

Distribution

Online

A brief description of the the content of online URL.
URL
https://workdrive.zohopublic.eu/external/w6vhXcjW4I-lTS6hv/download
 
 

Not available