Parameter.tsv

This is an input parameter file used for running PEMA on COI marker gene data in the ARMS Internal Joint Initiative workflow.

It is a tsv file that can be uploaded in order to specify which sequence (which column gene_18S, gene_COI, gene_ITS) is chosen. It is a well-defined template and the user is required to modify certain fields only.

Identification

Alternate Identifier: d1a99bb1-7d5f-4338-8dba-58b922ec42b2

Publication Date: 2021-02-11

Title: Parameter.tsv

Abstract

This is an input parameter file used for running PEMA on COI marker gene data in the ARMS Internal Joint Initiative workflow.

Status: Required

Dataset Creator: Hellenic Centre for Marine Research - Christina Pavloudi (Scientist )
https://orcid.org/0000-0001-5106-6067

Metadata Provider: Flanders Marine Institute (VLIZ) - Katrina Exter (Data Manager )
https://orcid.org/0000-0002-5911-1536

Dataset Contact: Hellenic Centre for Marine Research - Christina Pavloudi (Scientist )

Keywords (none )

PEMA
targetLength
palindromeClipThreshold
DNA Metabarcoding Analysis
parameter

Geographic Coverage

Geographic Description

Bounding Box

West Bounding Coordinate

East Bounding Coordinate

North Bounding Coordinate

South Bounding Coordinate

Temporal Coverage

Range of Dates

Begin Date

2021-02-11

End Date

2021-02-11

Taxonomic Coverage

No information provided.

License Information

Intellectual Rights: CC BY

Resource License

License Name: Creative Commons

URL: https://creativecommons.org/licenses/by/2.0/

OnlineResource

URL: https://workdrive.zohopublic.eu/external/w6vhXcjW4I-lTS6hv/download

Not available

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