Metabarcoding Occurrence Intersector

This service intersects the map(s) (geographical spatial polygons) from GBIF occurrence(s) with the locations of a list of taxa detected from eDNA metabarcoding and which were not included in the NIS checklist to verify if such eDNA detection(s) is/are likely to be new NIS detected in that location from eDNA sequences.

It represents the Step 5 of the Metabarcoding Workflow within the Internal Joint Initiative.

Default

Date ( Publication)
2021-03-23
Date ( Creation)
2019-07-04
Status
Under development / Pre operational
Principal investigator
  CIBIO-InBIO - Ana Filipa Filipe

Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS

Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira

Principal investigator
  LifeWatch ERIC ICT Core - ICT Core Group

Keywords

metagenomics
Keywords

biogeography
Keywords

remote sensing
Keywords

Geographic information
Keywords

Spatial data
Keywords

Native taxa
Keywords

Unrecorded taxa
Keywords

eDNA detections
Keywords

Metabarcoding
Keywords

IJI
Access constraints
License
Use limitation

The final license will be available soon.
Protocol

DOI
Operation name

sample_data_step_4_out.rdata
Function

Input file
Operation name

occurrences_metabc_out.csv
Function

Output file
Service Category

data processing
Service Language
eng
Service TRL
TRL 7 – System prototype demonstration in operational environment
Service Helpdesk

https://helpdesk.lifewatch.eu/

Metadata

File identifier
ddf9cb0c-7655-4930-8501-c11f4e233677 XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

1.0
 
 

Overviews

overview
metagenomics.jpg

Spatial extent

Keywords



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