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ARMS WoRMS Taxonomic Checker

This step of the ARMS IJI workflow does the following:

- Input: the OTU tables from the previous step (running the omics pipeline), containing taxa (usually genus or species names) obtained from the databases used by the pipeline;

- Check: using the WoRMS taxon match webservice to check for the WoRMS match to those taxa;

- Output: the WoRMS match (yes or not) and, if matched, the scientific name and aphiaID.

It represents the Step 7 of the ARMS Workflow within the Internal Joint Initiative.

Default

Date ( Publication)
2021-03-29
Date ( Creation)
2019-07-04
Status
Under development / Pre operational
Principal investigator
  VLIZ - Katrina Exter

Custodian
  LifeWatch ERIC ICT Core - Antonio José SÁENZ-ALBANÉS

Publisher
  LifeWatch ERIC Service Centre - Lucia Vaira

Principal investigator
  LifeWatch ERIC ICT Core - ICT Core Group

Keywords

remote sensing

Keywords

metagenomics

Keywords

species information backbone

Keywords

taxonomy

Keywords

synonymy

Keywords

taxon match

Keywords

taxonomic classification

Keywords

ARMS

Keywords

IJI

Access constraints
License
Use limitation

The final license will be available soon.

OnLine resource
WoRMS taxon match webservice (LifeWatch.be) (

WWW:LINK-1.0-http--link

)
Operation name

Unified_species.csv

Function

Input file

Operation name

Unified_species_worms.csv

Function

Output file

Service Category

data validation

Service Category

data analysis

Service Category

data processing

Service Language
eng
Service TRL
TRL 7 – System prototype demonstration in operational environment
Service Helpdesk

https://helpdesk.lifewatch.eu/

Service Training

https://training.lifewatch.eu/resources/?resource=/course/view.php?id=38

Metadata

File identifier
e9cb479f-9a36-4504-8d59-dd28520cec70 XML
Metadata language
en
Hierarchy level
Service
Metadata Schema Version

1.0

 
 

Overviews

overview
metagenomics.jpg

Spatial extent

Keywords



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