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Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform

Tara expeditions sampled the world’s oceans with standardized protocols, putting an exceptional effort into sampling plankton diversity across a large size range, using a combination of water samples and net tows.

The efforts to explore the genomic diversity of plankton, through metabarcoding and metagenomics, have led to well publicized papers and have made the renown of Tara. While a similar extensive effort has been put on imaging, the datasets are not public yet.

In a limited number of stations, in addition to the usual 5μm -> ~5cm Tara sampling strategy, Bongo net samples were taken during the day and during the night, at the same station; this is the content of this dataset. Using a 300µm mesh net, it cover organisms from 300µm to ~3cm

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Identification

Publication Date
2021-12-02
Title

Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform

Abstract

Tara expeditions sampled the world’s oceans with standardized protocols, putting an exceptional effort into sampling plankton diversity across a large size range, using a combination of water samples and net tows.

The efforts to explore the genomic diversity of plankton, through metabarcoding and metagenomics, have led to well publicized papers and have made the renown of Tara. While a similar extensive effort has been put on imaging, the datasets are not public yet.

In a limited number of stations, in addition to the usual 5μm -> ~5cm Tara sampling strategy, Bongo net samples were taken during the day and during the night, at the same station; this is the content of this dataset. Using a 300µm mesh net, it cover organisms from 300µm to ~3cm

Dataset Language

en

 
Dataset Creator
  European Molecular Biology Laboratory - Stefanie Kandels-Lewis

Dataset Creator
  European Molecular Biology Laboratory - Erik Karsenti

Dataset Creator
  Sorbonne Université - Céline Dimier

Dataset Creator
  Sorbonne Université - Amanda Elineau

Dataset Creator
  Sorbonne Université - Gabriel Gorsky

Dataset Creator
  Sorbonne Université - Jean-Olivier Irisson

Dataset Creator
  Sorbonne Université - Laetitia Jalabert

Dataset Creator
  Sorbonne Université - Natalia Llopis Monferrer

Dataset Creator
  Sorbonne Université - Fabien Lombard

Dataset Creator
  Sorbonne Université - Marc Picheral

Dataset Creator
  Sorbonne Université - Jean-Baptiste Romagnan

Dataset Creator
  Sorbonne Université - Sarah Searson

Dataset Creator
  Sorbonne Université - Lars Stemmann

Dataset Creator
  Sorbonne Université; Sorbonne Université/CNRS, Institut de la Mer de Villefranche - Amanda Elineau

Dataset Creator
  Sorbonne Université; Sorbonne Université/CNRS, Institut de la Mer de Villefranche - Laetitia Jalabert

Dataset Creator
  Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche - Natalia Llopis Monferrer

Dataset Creator
  Sorbonne Université; Sorbonne Université/CNRS, Station Biologique de Roscoff - Céline Dimier

Dataset Creator
  Tara Oceans Consortium - Tara Oceans Consortium Coordinators

Dataset Creator
  University of Bremen; Centre for Marine Environmental Sciences - Stéphane Pesant

Metadata Provider
  Flanders Marine Institute (VLIZ)

BE

https://www.vliz.be
Associated Party

contentProvider

  Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche - Amanda Elineau

Associated Party

contentProvider

  Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche - Laetitia Jalabert

Associated Party

contentProvider

  Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche - Jean-Baptiste Romagnan

Associated Party

contentProvider

  Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche - Lars Stemmann

Dataset Contact
  Sorbonne Université; Sorbonne Université/CNRS, Laboratoire d'Océanographie de Villefranche - Fabien Lombard

Keywords (ASFA)
  • EcoTaxa

  • Imaging

  • ZooSCAN

Geographic Coverage

Geographic Description

EurOBIS calculated BBOX > station Bounding Box

Bounding Box

West Bounding Coordinate

-168.348333

East Bounding Coordinate

174.86

North Bounding Coordinate

79.218333

South Bounding Coordinate

-64.355

Geographic Coverage

Geographic Description

World Oceans

Bounding Box

West Bounding Coordinate

-168.348

East Bounding Coordinate

174.86

North Bounding Coordinate

79.218

South Bounding Coordinate

-64.355

Temporal Coverage

Range of Dates

Begin Date

2009-09-07

End Date

2013-10-27

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104074

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Acartiidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:882

Taxonomic Classification

Taxonomic Rank Name

phylum

Taxonomic Rank Value

Annelida

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104077

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Augaptilidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104079

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Calanidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:1100

Taxonomic Classification

Taxonomic Rank Name

order

Taxonomic Rank Value

Calanoida

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104669

Taxonomic Classification

Taxonomic Rank Name

species

Taxonomic Rank Value

Calocalanus pavo (Dana, 1849)

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104080

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Candaciidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104081

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Centropagidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:1080

Taxonomic Classification

Taxonomic Rank Name

subclass

Taxonomic Rank Value

Copepoda

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104085

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Eucalanidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104086

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Euchaetidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:1086

Taxonomic Classification

Taxonomic Rank Name

subclass

Taxonomic Rank Value

Eumalacostraca

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:1128

Taxonomic Classification

Taxonomic Rank Name

order

Taxonomic Rank Value

Euphausiacea

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:106267

Taxonomic Classification

Taxonomic Rank Name

genus

Taxonomic Rank Value

Evadne Lovén, 1836

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:1410

Taxonomic Classification

Taxonomic Rank Name

phylum

Taxonomic Rank Value

Foraminifera

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104087

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Heterorhabdidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:1205

Taxonomic Classification

Taxonomic Rank Name

suborder

Taxonomic Rank Value

Hyperiidea

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:106422

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Oithonidae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:106266

Taxonomic Classification

Taxonomic Rank Name

genus

Taxonomic Rank Value

Penilia

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:345868

Taxonomic Classification

Taxonomic Rank Name

subclass

Taxonomic Rank Value

Phaeodaria

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:109444

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Pyrocystaceae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:582420

Taxonomic Classification

Taxonomic Rank Name

infrakingdom

Taxonomic Rank Value

Rhizaria

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:104106

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Temoridae

Taxonomic Coverage

General Taxonomic Coverage

urn:lsid:marinespecies.org:taxname:958

Taxonomic Classification

Taxonomic Rank Name

family

Taxonomic Rank Value

Tomopteridae

License Information

Intellectual Rights

This work is licensed under a

Creative Commons Attribution (CC-BY) 4.0 License

.

 

Distribution

Online

URL
https://ecotaxa.obs-vlfr.fr/api/collections/by_short_title?q=tara-oceans-bongo-zooscan
 

Additional Metadata

describes

Extra metadata added by VLIZ to add parameter, platform info, as well as GBIF fields

Metadata

GBIF Metadata Block

Date Stamp

2021-12-02T14:57:33+01:00

Hierarchy Level

dataset

Citation

Romagnan, J.B., Jalabert, L., Llopiz Monferrer, N., Elineau, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Tara Oceans Consortium Coordinators, Karsenti, E., Pesant, S., Irisson, J.O., Lombard, F., Stemmann, L., Gorsky, G.; (2020) Occurrence of Eukaryotes in the size fraction >300 micrometres, collected worldwide during the Tara Oceans expedition (2009-2013) using a Bongo net and analysed on a ZooScan imaging platform http://dx.doi.org/10.14284/518

Physical

Object Name

Online dataset

Character Encoding

UTF-8

Data Format

Externally Defined Format

Format Name

HTML

Distribution

Online

URL
https://www.emodnet-biology.eu/portal/index.php?dasid=6512

Physical

Object Name

Online dataset

Character Encoding

UTF-8

Data Format

Externally Defined Format

Format Name

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Distribution

Online

URL
https://www.emodnet-biology.eu/toolbox/en/download/occurrence/dataset/6512

Physical

Object Name

IPT

Character Encoding

UTF-8

Data Format

Externally Defined Format

Format Name

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Distribution

Online

URL
http://ipt.vliz.be/eurobis/resource?r=dasid_6512

Physical

Object Name

Online dataset

Character Encoding

UTF-8

Data Format

Externally Defined Format

Format Name

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Distribution

Online

URL
https://obis.org/dataset/f180f1e9-817b-49f7-b5f4-04e1cc193f48

Physical

Object Name

Metadata

Character Encoding

UTF-8

Data Format

Externally Defined Format

Format Name

HTML

Distribution

Online

URL
http://www.eurobis.org//imis?dasid=6512