Type of resources
Contact for the resource
NICHE Vlaanderen (Nature Impact Assessment of Changes in Hydro-Ecological Systems) is a hydro-ecological model that predicts the potential occurrence of (ground)water-dependent vegetation types in an area based on information about the (abiotic) site conditions. NICHE Vlaanderen can be used to evaluate the impact of changes in the water management to groundwater-dependent vegetation. The model is based on a number of location factors that are important for the vegetation: soil type, hydrology, nutrient availability and acidity. Based on calculated abiotic properties of the location NICHE Vlaanderen determines whether certain vegetation types can develop. An additional flooding module allows the user to test whether the predicted vegetations are compatible with a particular flooding regime. This project is a redevelopment of an existing ArcGIS plugin in Python, without external non-open source dependencies.
A tool for Quality Controlling Darwin Core based datasets according to the EMODnet Biology guidelines. The tool performs a thorough QC on OBIS-env datasets and occurrence core datasets. It can use an IPT resource URL as input. Quality controlling a dataset is fundamental in order to ensure its appropriate usage. The EMODnetBiocheck R package is developed in the framework of the LifeWatch and EMODnet Biology projects, and managed by the EurOBIS (European Ocean Biodiversity Information System) Data Management Team at the Flanders Marine Institute (VLIZ). It helps users to Quality Control their (marine) biological datasets by performing a varied number of quality checks on both published and unpublished datasets. This R package also allows a thorough visual exploration of the dataset, while highlighting potential issues within the dataset. The R package can be used on: i) public IPT resources; ii) loaded data tables. The only requirement to use the R package is the existence of an Occurrence table in the dataset, although the analysis reaches its full potential using an IPT resource with OBIS-ENV data format (Core: "Event"; Extensions: "Occurrence" and "Extended Measurements or Facts").
pywhip is a Python package to validate data against whip specifications, a human and machine-readable syntax to express specifications for data.
The LifeWatch and EMODnet Biology QC Tool allows you to assess to what extend a dataset published on an IPT or a DwC-A file meets the EMODnet Biology Data Quality Criteria. This tool is based on the EMODnetBioCheck R package (https://github.com/EMODnet/EMODnetBiocheck) that was created using the obistools package (https://github.com/iobis/obistools) and it is available from the LifeWatch services at http://rshiny.lifewatch.be/BioCheck/. The Biocheck tool performs a detailed Quality Control on OBIS-env datasets and occurrence core dataset. It provides a way for a visual exploration of the dataset and highlights potential issues.
bioRad provides standardized methods for extracting and reporting biological signals from weather radars. It includes functionality to inspect low-level radar data, process these data into meaningful biological information on animal speeds and directions at different altitudes in the atmosphere, visualize these biological extractions, and calculate further summary statistics.