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The RvLab is a very useful and powerful tool, both for users who are already familiar with R (and some of its functions) but also for students and/or scientists who are in favour of open source software and would like to dedicate some time to get familiar with its functions, without having to go through the steep command line R learning curve. The RvLab makes use of "R" which is a statistical processing environment widely used by scientists working in many biodiversity related disciplines. It supports an integrated and optimized (in respect to computational speed-up and data manipulation) online R environment. This vLab tackles common problems faced by R users, such as severe computational power deficit. Many of the routines operating under the R environment, such as the calculation of several biodiversity indices and the running of the multivariate analyses, are often of high computational demand and cannot deliver a result when the respective datasets are in the form of large matrices. The RvLab runs on a HPC cluster, using version 3.5.2 (2018-12-20) on a x86_64-pc-linux-gnu (64-bit) platform, and offers an intuitive virtual environment interface enabling users to perform analysis of ecological and microbial communities based on optimized vegan functions. The user can benefit from the availability of newly designed functions if the dataset to be analysed requires their implementation. The RvLab is an interactive virtual laboratory; should the user require other types of functions, these can be added in the "laboratory" and become available online in a short time. Login is required.
The SCAR Antarctic Biodiversity Portal (biodiversity.aq) is an international effort that seeks to increase our knowledge and understanding of Antarctic and Southern Ocean biodiversity. It is a community of researchers, data custodians and developers from around the world that supports the mobilization publication, retrieval and analysis of Antarctic and Southern Ocean biodiversity data in a free and open manner in line with the Antarctic treaty and the FAIR data Principles (Findable, Accessible, Interoperable, Reusable). The main aim is to create an information ecosystem of various data bases, data systems, web services, tools, etc. that can be used by anyone with an interest in Antarctic and Southern Ocean biodiversity. Biodiversity.aq is an international initiative of the Scientific Committee on Antarctic Research (SCAR). It finds it roots in the Census of Antarctic Marine Life and started in 2005. The central facilities are hosted by the Royal Belgian Institute for Natural sciences (RBINS, www.naturalsciences.be) and the Belgian Biodiversity Platform (BBPf, www.biodiversity.be).
An R package to get downloads from the EurOBIS database. In 2019, development started for the eurobis R package, to serve as an easy to use interface to download EurOBIS data in R. Currently, the main functions and documentation are being developed and are working, but need some further testing and user feedback before it can be officially released.
EurOBIS is the european node of the Ocean Biodiversity Information System (OBIS) and part of the LifeWatch Belgium Species Information Backbone and EMODnet Biology. It aims at containing a wide range of taxonomic and species related data; the main goal being the integration of distributed biodiversity data repositories and operating facilities. EurOBIS plays an important role in this as the central storage facility for marine biogeographic data from all over Europe. The EurOBIS data infrastructure is used as the central hub for making biological data available within the biological lot of EMODnet. Through EMODnet Biology the biodiversity occurrence data are available as a Web Feature Service (WFS) in accordance with the Open Geospatial Consortium (OGC) specifications. This webservice supports requests for geographical feature data (with vector geometry and attributes).
The University of Azores hosts the Azores Bioportal (http://azoresbioportal.uac.pt/) a regional E-Infrastructure. The Azorean Biodiversity Portal (ABP) is an e-infrastructure now associated with Portuguese PORBIOTA and LIFEWATCH. The ABP is a key e-infrastructure for the integrated management of biodiversity data of the Azores, providing a large number of specialized services supporting research, policy and education. The 3000 visits per day, the numerous international scientific collaborations, resulting in publications and academic thesis, and the connection with other prestigious databases demonstrate the Portal’s scientific quality as well as its general appeal. Several Natural History Collections are also managed by University of Azores, namely of Algae, Bryophytes, Vascular Plants, Molluscs and Arthropods.The Azorean Biodiversity Portal shares all the information available on the biodiversity of the Azores, one of the five Macaronesian archipelagos (the other being Madeira, Salvage Islands, the Canary Islands and Cape Verde). Macaronesia is recognized as an important part of the Mediterranean hotspot of biodiversity; however, a comprehensive systematic revision of its biodiversity was still lacking at the end of the 20th century.Based in two European INTERREG IIIB projects, an unprecedented collaboration of more than 200 taxonomists and other scientists resulted in accurate and comprehensive lists of terrestrial species in the Canary Islands (Izquierdo et al., 2001, 2004; Moro et al., 2003), Cape Verde (Arechavaleta et al., 2005), the Azores (Borges et al., 2005b, 2010) and Madeira–Selvagens (Borges et al., 2008). This unique collaboration was fundamental for creating the baseline taxonomic information for the ABP, updating the taxonomic information, listing synonyms.
FOR-PLAT is a first step of establishment of high-throughput data centre for collecting, modelling and analysis of forest ecosystem biotic diversity data in the frame of LifeWatch Slovenia. It is an upgrade of present research infrastructure of the Slovenian Forestry Institute on the fields of biodiversity monitoring and response of terrestrial ecosystem to changing climate as well as monitoring of other processes in forests in the national mesh of research plots. The database is part of the national data hub RI-SI-LifeWatch ERIC VRE.