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This interactive online tool gives access to all sensor data collected in the framework of the Flemish LifeWatch project, and provides an interface to explore and analyze these data. Several thematic portals have been set up as part of the Data Explorer: - Underway Data Explorer - Station Data Explorer - Zooplankton Data Explorer - GPS Bird Tracking Data Explorer - Fish Telemetry Data Explorer - Batcorder Data Explorer - CPOD (marine mammals) Data Explorer Within the RShiny LifeWatch Data Explorer, five general sections are available to explore, plot, visualize and download data. Some of the more recent data is temporarily under moratorium and therefore protected by password access. The LifeWatch Data Explorer is built using RShiny server, Leaflet, ggplot2, PLotly, Dygraph and DataTables. The system is able to query MSSQL, PostgreSQL, Geoserver (WFS) and MongoDB servers.
In the marine domain, LifeWatch provides data services for a large and broad user community dealing with a variety of data types. Activities include provision of data tools and services for taxonomic, ecological, omics, biogeographic, environmental and biological observation data. Tools for data archiving, access, quality control, standardization, harmonization, analysis and publication are integrated in a Marine Virtual Research Environment (Marine VRE). In this regard, the LifeWatch Marine VRE aspires to be the transparent gateway to access, analyze and develop marine data resources. The Marine VRE is built on three components: - Through the "Access" page, the user can retrieve marine biodiversity and ecosystem data. For all resources listed, a description of the data on offer is available and connecting web links are displayed. - Arriving at the "Analyze" page, one can find applications and tools for advanced calculations, modelling and data processing. Through these environments, state-of-the-art workflows and modelling approaches are shared and accessible to all. - Finally, the "Develop" page allows the user to access data services, as well as develop their own. Documented R scripts and tutorials, outputs from expert workshops and detailed methodological workflow of certain data products or scientific publications are only a few examples of how Marine VRE puts the sharing of data and expertise to practice. Now, a marine researcher can access a multitude of available data, find the appropriate tools for analysis, apply and develop existing expertise through data services. Facilitating a scientist's pursuit of knowledge, the LifeWatch Marine VRE contributes to high quality marine research.
One of the virtual laboratories developed by LifeWatch Belgium is the Belgian LifeWatch eLab. This online application allows users to standardise, analyse and visualise their data, making use of web services built on top of internal and external reference databases. The ultimate goal of LifeWatch is to set up a network for data exchange and data analysis through web services. Web services are systems that allow communication between two computers over the web, and allow the user to access the most recent and up-to-date information directly from within other applications. Within LifeWatch Belgium, several web services are available to standardise, analyse and visualise your data, and to extract additional data from several sources. The user can select several data services (taxonomic, geographic, thematic, etc.) and run them successively through a straightforward online user interface. You can also use the LifeWatch.be web services in a concatenated way, i.e. the output of one web service is the input for the next web service. Establishing such workflows helps solving (complicated) biological questions. Several use cases demonstrate the use of the LifeWatch web services. So as to facilitate the use of the LifeWatch web services, several applications and tools were documented in use cases and tutorials. These can be found on the links below, as well as on the specific websites of software packages and Github repositories. The Belgian LifeWatch E-Lab online application allows users to standardize, analyze and visualize their data, making use of web services built on top of internal and external reference databases. A user can select several data services (taxonomic, geographic, thematic, etc.) and run them successively through a straightforward user interface. As explained in the user guide, the LifeWatch.be web services can be used in a concatenated way, i.e. the output of one web service is the input for the next web service.
The ARMS European project is a Genomics Observatory and a collaboration of ~20 European institutes. Our network of Autonomous Reef Monitoring Structures (ARMS) consists of ~25 observatories who deploy individual settlement units in the vicinity of marine stations and Long-term Ecological Research sites in European coastal waters and Ant/arctica. After a few months they are brought up, and visual, photographic, and genetic assessments are made of the lifeforms that settled on them. These data will be used to assess the status of, and changes in, the hard-bottom communities of these near-coast environments. This project began in 2019 and will run for as long as funding allows. The scientific goals are: - to identify newly arrived Non-Indigenous Species (NIS) at each ARMS site; - to track the migration of already known NIS in European continental waters; - to monitor hard-bottom community composition over longer periods; - to identify the Essential Biodiversity Variables for hard-bottom fauna, including NIS.